Literature DB >> 29705977

New Features for Neuron Classification.

Leonardo A Hernández-Pérez1, Duniel Delgado-Castillo2, Rainer Martín-Pérez2, Rubén Orozco-Morales3, Juan V Lorenzo-Ginori4.   

Abstract

This paper addresses the problem of obtaining new neuron features capable of improving results of neuron classification. Most studies on neuron classification using morphological features have been based on Euclidean geometry. Here three one-dimensional (1D) time series are derived from the three-dimensional (3D) structure of neuron instead, and afterwards a spatial time series is finally constructed from which the features are calculated. Digitally reconstructed neurons were separated into control and pathological sets, which are related to three categories of alterations caused by epilepsy, Alzheimer's disease (long and local projections), and ischemia. These neuron sets were then subjected to supervised classification and the results were compared considering three sets of features: morphological, features obtained from the time series and a combination of both. The best results were obtained using features from the time series, which outperformed the classification using only morphological features, showing higher correct classification rates with differences of 5.15, 3.75, 5.33% for epilepsy and Alzheimer's disease (long and local projections) respectively. The morphological features were better for the ischemia set with a difference of 3.05%. Features like variance, Spearman auto-correlation, partial auto-correlation, mutual information, local minima and maxima, all related to the time series, exhibited the best performance. Also we compared different evaluators, among which ReliefF was the best ranked.

Entities:  

Keywords:  Neuron classification; Neuron features; Reconstructed neuron tree

Mesh:

Year:  2019        PMID: 29705977     DOI: 10.1007/s12021-018-9374-0

Source DB:  PubMed          Journal:  Neuroinformatics        ISSN: 1539-2791


  29 in total

Review 1.  Use of fractal theory in neuroscience: methods, advantages, and potential problems.

Authors:  E Fernández; H F Jelinek
Journal:  Methods       Date:  2001-08       Impact factor: 3.608

2.  TReMAP: Automatic 3D Neuron Reconstruction Based on Tracing, Reverse Mapping and Assembling of 2D Projections.

Authors:  Zhi Zhou; Xiaoxiao Liu; Brian Long; Hanchuan Peng
Journal:  Neuroinformatics       Date:  2016-01

3.  The electrotonic structure of pyramidal neurons contributing to prefrontal cortical circuits in macaque monkeys is significantly altered in aging.

Authors:  Doron Kabaso; Patrick J Coskren; Bruce I Henry; Patrick R Hof; Susan L Wearne
Journal:  Cereb Cortex       Date:  2009-01-15       Impact factor: 5.357

Review 4.  Machine learning, medical diagnosis, and biomedical engineering research - commentary.

Authors:  Kenneth R Foster; Robert Koprowski; Joseph D Skufca
Journal:  Biomed Eng Online       Date:  2014-07-05       Impact factor: 2.819

5.  Dendritic and spinal alterations of neurons from Edinger-Westphal nucleus in Alzheimer's disease.

Authors:  Ioannis Asterios Mavroudis; Marina George Manani; Foivos Petrides; Constantina Petsoglou; Samuel N Njau; Vasiliki G Costa; Stavros J Baloyannis
Journal:  Folia Neuropathol       Date:  2014       Impact factor: 2.038

6.  Heart rate variability: standards of measurement, physiological interpretation and clinical use. Task Force of the European Society of Cardiology and the North American Society of Pacing and Electrophysiology.

Authors: 
Journal:  Circulation       Date:  1996-03-01       Impact factor: 29.690

7.  Histopathological correlates of magnetic resonance imaging-defined chronic perinatal white matter injury.

Authors:  Art Riddle; Justin Dean; Joshua R Buser; Xi Gong; Jennifer Maire; Kevin Chen; Tahir Ahmad; Victor Cai; Thuan Nguyen; Christopher D Kroenke; A Roger Hohimer; Stephen A Back
Journal:  Ann Neurol       Date:  2011-07-27       Impact factor: 10.422

Review 8.  Towards the automatic classification of neurons.

Authors:  Rubén Armañanzas; Giorgio A Ascoli
Journal:  Trends Neurosci       Date:  2015-03-09       Impact factor: 13.837

9.  Pitfalls of supervised feature selection.

Authors:  Pawel Smialowski; Dmitrij Frishman; Stefan Kramer
Journal:  Bioinformatics       Date:  2009-10-29       Impact factor: 6.937

10.  Spatial heterogeneity in oligodendrocyte lineage maturation and not cerebral blood flow predicts fetal ovine periventricular white matter injury.

Authors:  Art Riddle; Ning Ling Luo; Mario Manese; Douglas J Beardsley; Lisa Green; Dawn A Rorvik; Katherine A Kelly; Clyde H Barlow; Jeffrey J Kelly; A Roger Hohimer; Stephen A Back
Journal:  J Neurosci       Date:  2006-03-15       Impact factor: 6.167

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