Literature DB >> 29705632

Bursting onto the scene? Exploring stochastic mRNA production in bacteria.

Daniel Jones1, Johan Elf2.   

Abstract

Recent large-scale measurements of gene expression variability (or noise) in E. coli have led to the unexpected conclusion that the variability is in large part dictated by and increasing with the mean level of expression. Here we review the evidence for this apparent universal trend in variability, as well as for the related idea that transcription is fundamentally bursty. We examine recently proposed mechanisms for burstiness and universality and argue that they do not explain important features of observed data. Finally, we discuss potential limitations and pitfalls in the interpretation of experimental measurements of cell-to-cell variability.
Copyright © 2018 Elsevier Ltd. All rights reserved.

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Year:  2018        PMID: 29705632     DOI: 10.1016/j.mib.2018.04.001

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  5 in total

1.  Analytical Expressions and Physics for Single-Cell mRNA Distributions of the lac Operon of E. coli.

Authors:  Krishna Choudhary; Atul Narang
Journal:  Biophys J       Date:  2019-07-03       Impact factor: 4.033

2.  Pathway dynamics can delineate the sources of transcriptional noise in gene expression.

Authors:  Lucy Ham; Marcel Jackson; Michael Ph Stumpf
Journal:  Elife       Date:  2021-10-12       Impact factor: 8.140

3.  Permutational analysis of Saccharomyces cerevisiae regulatory elements.

Authors:  Namrita Dhillon; Robert Shelansky; Brent Townshend; Miten Jain; Hinrich Boeger; Drew Endy; Rohinton Kamakaka
Journal:  Synth Biol (Oxf)       Date:  2020-06-16

4.  Dynamic insights on transcription initiation and RNA processing during bacterial adaptation.

Authors:  Caroline Lacoux; Aymeric Fouquier d'Hérouël; Françoise Wessner-Le Bohec; Nicolas Innocenti; Chantal Bohn; Sean P Kennedy; Tatiana Rochat; Rémy A Bonnin; Pascale Serror; Erik Aurell; Philippe Bouloc; Francis Repoila
Journal:  RNA       Date:  2020-01-28       Impact factor: 4.942

5.  The route to transcription initiation determines the mode of transcriptional bursting in E. coli.

Authors:  Christoph Engl; Goran Jovanovic; Rowan D Brackston; Ioly Kotta-Loizou; Martin Buck
Journal:  Nat Commun       Date:  2020-05-15       Impact factor: 14.919

  5 in total

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