Literature DB >> 29704305

Exponential Isothermal Amplification of Nucleic Acids and Assays for Proteins, Cells, Small Molecules, and Enzyme Activities: An EXPAR Example.

Michael S Reid1, X Chris Le1,2, Hongquan Zhang2.   

Abstract

Isothermal exponential amplification techniques, such as strand-displacement amplification (SDA), rolling circle amplification (RCA), loop-mediated isothermal amplification (LAMP), nucleic acid sequence based amplification (NASBA), helicase-dependent amplification (HDA), and recombinase polymerase amplification (RPA), have great potential for on-site, point-of-care, and in situ assay applications. These amplification techniques eliminate the need for temperature cycling, as required for the polymerase chain reaction (PCR), while achieving comparable amplification yields. We highlight here recent advances in the exponential amplification reaction (EXPAR) for the detection of nucleic acids, proteins, enzyme activities, cells, and metal ions. The incorporation of fluorescence, colorimetric, chemiluminescence, Raman, and electrochemical approaches enables the highly sensitive detection of a variety of targets. Remaining issues, such as undesirable background amplification resulting from nonspecific template interactions, must be addressed to further improve isothermal and exponential amplification techniques.
© 2018 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  EXPAR; nicking endonucleases; nonspecific interaction; point-of-care detection; ultrasensitive assays

Mesh:

Substances:

Year:  2018        PMID: 29704305     DOI: 10.1002/anie.201712217

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  23 in total

1.  Competitive fluorometric assay for the food toxin T-2 by using DNA-modified silver nanoclusters, aptamer-modified magnetic beads, and exponential isothermal amplification.

Authors:  Man Zhang; Yu Wang; Shuai Yuan; Xuan Sun; Bingyang Huo; Jialei Bai; Yuan Peng; Baoan Ning; Baolin Liu; Zhixian Gao
Journal:  Mikrochim Acta       Date:  2019-03-07       Impact factor: 5.833

2.  Physical and chemical template-blocking strategies in the exponential amplification reaction of circulating microRNAs.

Authors:  Michael P Trinh; Jocelyn G Carballo; Gary B Adkins; Kaizhu Guo; Wenwan Zhong
Journal:  Anal Bioanal Chem       Date:  2020-02-19       Impact factor: 4.142

3.  Fluorometric determination of microRNA using arched probe-mediated isothermal exponential amplification combined with DNA-templated silver nanoclusters.

Authors:  Hao Wu; Jun Wu; Yaling Liu; Hongyong Wang; Pei Zou
Journal:  Mikrochim Acta       Date:  2019-10-25       Impact factor: 5.833

4.  Sandwich capture ultrasensitive sensor based on biohybrid interface for the detection of Cronobacter sakazakii.

Authors:  Xiuyuan Xu; Longjiao Zhu; Xinxin Wang; Xinyue Lan; Huashuo Chu; Hongtao Tian; Wentao Xu
Journal:  Appl Microbiol Biotechnol       Date:  2022-05-26       Impact factor: 4.813

5.  Symmetric exponential amplification reaction-based DNA nanomachine for the fluorescent detection of nucleic acids.

Authors:  Qi Yan; Qiuyue Duan; Yuqi Huang; Jing Guo; Liang Zhong; Hong Wang; Gang Yi
Journal:  RSC Adv       Date:  2019-12-13       Impact factor: 4.036

6.  rEXPAR: An Isothermal Amplification Scheme That Is Robust to Autocatalytic Parasites.

Authors:  Georg Urtel; Marc Van Der Hofstadt; Jean-Christophe Galas; André Estevez-Torres
Journal:  Biochemistry       Date:  2019-05-29       Impact factor: 3.162

7.  CRISPR-Cas12a based internal negative control for nonspecific products of exponential rolling circle amplification.

Authors:  Bo Tian; Gabriel Antonio S Minero; Jeppe Fock; Martin Dufva; Mikkel Fougt Hansen
Journal:  Nucleic Acids Res       Date:  2020-03-18       Impact factor: 16.971

8.  Microfluidic-RT-LAMP chip for the point-of-care detection of emerging and re-emerging enteric coronaviruses in swine.

Authors:  Ling Zhou; Yonghui Chen; Xueen Fang; Yanhong Liu; Mengkan Du; Xiandong Lu; Qianniu Li; Yuan Sun; Jingyun Ma; Tian Lan
Journal:  Anal Chim Acta       Date:  2020-05-19       Impact factor: 6.558

9.  Differential DNA accessibility to polymerase enables 30-minute phenotypic β-lactam antibiotic susceptibility testing of carbapenem-resistant Enterobacteriaceae.

Authors:  Nathan G Schoepp; Eric J Liaw; Alexander Winnett; Emily S Savela; Omai B Garner; Rustem F Ismagilov
Journal:  PLoS Biol       Date:  2020-03-19       Impact factor: 8.029

Review 10.  Using gold nanoparticles to detect single-nucleotide polymorphisms: toward liquid biopsy.

Authors:  María Sanromán Iglesias; Marek Grzelczak
Journal:  Beilstein J Nanotechnol       Date:  2020-01-31       Impact factor: 3.649

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