Literature DB >> 29704119

Investigation of rubidium(I) ion solvation in liquid ammonia using QMCF-MD simulation and NBO analysis of first solvation shell structure.

Yuniawan Hidayat1,2,3, Ria Armunanto4,5, Harno Dwi Pranowo2,3.   

Abstract

Rb(I) ion solvation in liquid ammonia has been studied by an ab initio quantum mechanical charge field molecular dynamics simulation, and the first solvation shell structure has been analyzed using natural bond orbital. The simulation was performed for an ion and 593 ammonia molecules in a box with a length of 29.03 Å corresponding to a liquid ammonia density of 0.69 g/mL at 235.16 K. The quantum mechanical calculation was carried out for atomic interactions in the radius of 6.4 Å from the ion using LANL2DZ ECP and DZP (Dunning) basis sets for Rb(I) ion and ammonia respectively. The trajectories of the simulation were analyzed in terms of radial, angular, and coordination number distribution functions, vibration, and mean residence time (MRT). Two solvation shell regions are observed for the Rb(I)-N as well as the Rb(I)-H. The maximum distance of Rb(I)-N in the first solvation shell is in accordance with experimental data where a coordination number of 8 is favorable. A non-single coordination number of the first and second shell indicates dynamic solvation structure. It is confirmed by frequent exchange ligand processes observed within a simulation time of 15 ps. The low stabilization energy of donor acceptor ion-ligand interaction with a small Wiberg bond index affirms that the Rb(I)-NH3 interaction is weak electrostatically.

Entities:  

Keywords:  Ammonia; Lability; NBO; QMCF; Rubidium; Simulation; Solvation

Year:  2018        PMID: 29704119     DOI: 10.1007/s00894-018-3668-x

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  13 in total

1.  Ion solvation thermodynamics from simulation with a polarizable force field.

Authors:  Alan Grossfield; Pengyu Ren; Jay W Ponder
Journal:  J Am Chem Soc       Date:  2003-12-17       Impact factor: 15.419

2.  Structure and dynamics of the chromate ion in aqueous solution. An ab initio QMCF-MD simulation.

Authors:  Ernst Hinteregger; Andreas B Pribil; Thomas S Hofer; Bernhard R Randolf; Alexander K H Weiss; Bernd M Rode
Journal:  Inorg Chem       Date:  2010-09-06       Impact factor: 5.165

3.  Structure and dynamics of sulfate ion in aqueous solution--an ab initio QMCF MD simulation and large angle X-ray scattering study.

Authors:  Viwat Vchirawongkwin; Bernd M Rode; Ingmar Persson
Journal:  J Phys Chem B       Date:  2007-04-03       Impact factor: 2.991

4.  Hydration of sodium(I) and potassium(I) revisited: a comparative QM/MM and QMCF MD simulation study of weakly hydrated ions.

Authors:  S Sikander Azam; Thomas S Hofer; Bernhard R Randolf; Bernd M Rode
Journal:  J Phys Chem A       Date:  2009-03-05       Impact factor: 2.781

5.  VMD: visual molecular dynamics.

Authors:  W Humphrey; A Dalke; K Schulten
Journal:  J Mol Graph       Date:  1996-02

6.  Natural bond orbital analysis: a critical overview of relationships to alternative bonding perspectives.

Authors:  Frank Weinhold
Journal:  J Comput Chem       Date:  2012-07-27       Impact factor: 3.376

7.  Electronic Structure Insights into the Solvation of Magnesium Ions with Cyclic and Acyclic Carbonates.

Authors:  Mehdi Shakourian-Fard; Ganesh Kamath; Subramanian K R S Sankaranarayanan
Journal:  Chemphyschem       Date:  2015-10-23       Impact factor: 3.102

8.  Interactions between phosphate and water in solution: a natural bond orbital based analysis in a QM/MM framework.

Authors:  Yang Yang; Qiang Cui
Journal:  J Phys Chem B       Date:  2007-03-29       Impact factor: 2.991

9.  Molecular Dynamics Investigation of Alkali Metal Ions in Liquid and Aqueous Ammonia.

Authors:  Esam A Orabi; Guillaume Lamoureux
Journal:  J Chem Theory Comput       Date:  2013-04-30       Impact factor: 6.006

10.  A study of the hydration of the alkali metal ions in aqueous solution.

Authors:  Johan Mähler; Ingmar Persson
Journal:  Inorg Chem       Date:  2011-12-14       Impact factor: 5.165

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