| Literature DB >> 29703155 |
Awoke Seyoum Tegegne1, Principal Ndlovu2, Temesgen Zewotir3.
Abstract
BACKGROUND: HIV has the most serious effects in Sub-Saharan African countries as compared to countries in other parts of the world. As part of these countries, Ethiopia has been affected significantly by the disease, and the burden of the disease has become worst in the Amhara Region, one of the eleven regions of the country. Being a defaulter or dropout of HIV patients from the treatment plays a significant role in treatment failure. The current research was conducted with the objective of comparing the performance of the joint and the separate modelling approaches in determining important factors that affect HIV patients' longitudinal CD4 cell count change and time to default from treatment.Entities:
Keywords: CD4 cell count change; GLMM; Heterogeneity; Homogeneity; Joint model; Time to default
Mesh:
Year: 2018 PMID: 29703155 PMCID: PMC5922030 DOI: 10.1186/s12879-018-3108-7
Source DB: PubMed Journal: BMC Infect Dis ISSN: 1471-2334 Impact factor: 3.090
Descriptive statistics of potential predictor variables of CD4 cell count change and time to default from HAART in the data sample size 792
| Variable | Average | No (%) | |
|---|---|---|---|
| Weight (kg) | 62 (58, 70) | – | |
| Baseline CD4 count cells/ mm3 | 150 (113, 198) | – | |
| Age (years) | 36 (28, 48) | – | |
| First month / initial CD4 cell count change/mm3 | 15.9 (12-26) | – | |
| Sex | Male | 391 (49.4) | |
| Female | 401 (50.6) | ||
| Educational status | no education | 160 (20.2) | |
| Primary | 205 (25.9) | ||
| Secondary | 273 (34.5) | ||
| Tertiary | 154 (19.4) | ||
| Residential area | Urban | 468 (59.1) | |
| Rural | 324 (40.9) | ||
| Marital status | Living with partner | 355 (44.8) | |
| Living without Partner | 437 (55.2) | ||
| Level of Income | Low income (< 500 ETB per month) | 355 (44.8) | |
| Middle income (5001-999 ETB per month) | 346 (43.7) | ||
| High income (≥1000ETB per month) | 91 (11.5) | ||
| WHO HIV Stage | Stage I | 101 (12.8) | |
| Stage II | 258 (32.6) | ||
| Stage III | 199 (25.1) | ||
| Stage IV | 234 (29.5) | ||
| Disclosure | Yes | 575 (72.6) | |
| No | 217 (27.4) | ||
| Cell ownership | Yes | 400 (50.5) | |
| No | 392 (49.5) | ||
| First month HAART adherence | Good | 540 (68.2) | |
| Fair | 160 (20.2) | ||
| Poor | 92 (11.6) | ||
Fig. 1The average CD4 cell count change versus the corresponding standard deviation at each follow-up visits
Comparison of quasi-Poisson and negative Binomial models using information criteria
| Criterion | quasi-Poisson | negative-Binomial | ||||
|---|---|---|---|---|---|---|
| Value | d.f | Value/d.f | Value | d.f | Value/d.f | |
| Pearson Chi-square | 1309 | 773 | 1.693 | 1530 | 773 | 1.98 |
| Log likelihood | − 2159 | − 2658 | ||||
| AIC | 4355 | 5354 | ||||
| BIC | 4444 | 5443 | ||||
Comparison of Weibul and Cox regression models using information criteria
| Criterion | Weibul model | Cox regression model | ||||
|---|---|---|---|---|---|---|
| Value | d.f | Value/d.f | Value | d.f | Value/d.f | |
| Pearson Chi-square | 1409 | 773 | 1.83 | 1630 | 773 | 2.11 |
| Log likelihood | − 2059 | −2658 | ||||
| AIC | 4255 | 5454 | ||||
| BIC | 4544 | 5543 | ||||
Posterior means and correspondence p-values for parameter estimation with inclusion and exclusion of patient specific variance
| Effect | Model (2): With homogeneity of variance for patients | Model (5): With patient specific variance/heterogeneity | ||
|---|---|---|---|---|
| Posterior estimate | Posterior estimate | |||
| Intercept | 4.350 | 0.004 | 4.130 | 0.002 |
| Age | −0.006 | 0.003 | − 0.036 | 0.005 |
| Weight | 0.001 | 0.082 | 0.001 | 0.082 |
| Baseline CD4 | 0.005 | 0.008 | 0.002 | 0.008 |
| Area (Reference = Urban) | ||||
| Rural | −0.002 | 0.064 | −0.003 | 0.003 |
| Marital Status (Reference = without partner) | ||||
| With partner | 0.007 | 0.003 | 0.005 | 0.003 |
| Sex (Reference = male) | ||||
| Female | 0.034 | 0.004 | 0.023 | 0.003 |
| Level of education (Reference = Tertiary) | ||||
| No educationl | 0.001 | 0.076 | 0.001 | 0.076 |
| Primary education | 0.017 | 0.044 | 0.017 | 0.034 |
| Secondary education | 0.020 | 0.028 | 0.010 | 0.038 |
| Level of Income (Reference = High income) | ||||
| Low income | −0.010 | 0.074 | −0.020 | 0.064 |
| Middle income | −0.006 | 0.062 | −0.016 | 0.052 |
| Owner of Cell phone (Reference = With phone) | ||||
| Without cell phone | −0.001 | 0.004 | −0.001 | 0.004 |
| Level of adherence (Reference = Good adherence) | ||||
| Poor adhere | −0.523 | 0.004 | −0.483 | 0.002 |
| Fair adhere | −0.452 | 0.001 | −0.552 | 0.002 |
| Level of disclosure the disease (Reference = yes) | ||||
| No | - 0.00195 | 0.0031 | −0.1020 | 0.0031 |
| WHO stages (Reference = Stage IV) | ||||
| Stage I | 0.1511 | 0.0021 | 0.2511 | 0.0021 |
| Stage II | 0.1567 | 0.0321 | 0.1567 | 0.0321 |
| Stage III | 0.1381 | 0.2311 | 0.4381 | 0.0311 |
| Time | 0.0210 | 0.0013 | 0.1210 | 0.0213 |
| Var (νi0) | 0.8820 | 0.8620 | ||
| Var (ν | 0.0210 | 0.0110 | ||
| Cov (νi0, νi1) | - 0.0542 | - 0.0642 | ||
| Corr (νi0, νi1) | −0.8214 | −0.7314 | ||
| DIC | 234,763 | 212,393 | ||
νi0 is the random of patient i effect and νi1 is the random fraility term
Posterior effects of the predictor variables from modeling CD4 cell count change with models (2) (no patient specific variance) and (5) (with patient specific variance)
| Parameters | Estimate | Standard error | |
|---|---|---|---|
| Intercept | 1.808 | 0.910 | 0.470 |
| Age | − 0.658 | 0.145 | 0.831 |
| Follow up times | 0.047 | 0.052 | 0.058 |
| Previous CD4 cell count (ref= | |||
| | 0.072 | 0.320 | 0.650 |
| Gender (ref = female) | |||
| Male | 0.003 | 0.084 | 0.976 |
| Residence area (ref = Urban) | |||
| Rural | −0.380 | 0.083 | 0.648 |
| Marital status(ref = living without partner) | |||
| Living with partner | 0.109 | 0.086 | 0.208 |
where y is the CD4 cell count at the jth follow-up visit; y is the CD4 cell count at the (j-1)th follow-up visit
Model selection for joint data analysis using generalized linear mixed effect for longitudinal data and Weibul Survival models for survival data
| Random Effects | W1(t) | W2(t) | DIC |
|---|---|---|---|
| Only fixed effect | 0 | 0 | 3547 |
| Fixed effect +random intercepts only |
| 0 | 3506 |
| Fixed effect +Random intercept+ random intercepts and slopes | 3481 |
A separate and joint model comparison for longitudinal CD4 cell count change and time to default from HAART
| parameter | Separate models | Joint models | ||
|---|---|---|---|---|
| Posterior mean | Posterior mean | |||
| Longitudinal sub models | ||||
| Intercept | 4.350 | 0.004 | 4.130 | 0.002 |
| Age | −0.006 | 0.003 | − 0.036 | 0.005 |
| Weight | 0.001 | 0.082 | 0.001 | 0.082 |
| Baseline CD4 | 0.004 | 0.008 | 0.002 | 0.008 |
| Marital Status (Reference = without partner) | ||||
| With partner | 0.007 | 0.003 | 0.005 | 0.003 |
| Sex (Reference = male) | ||||
| Female | 0.034 | 0.004 | 0.023 | 0.003 |
| Ownership of cell phone (Reference = With phone) | ||||
| Without cell phone | −0.001 | 0.004 | −0.001 | 0.004 |
| Level of adherence (Reference = Good adherence) | ||||
| Poor adherence | − 0.523 | 0.004 | − 0.483 | 0.002 |
| Fair adherence | −0.452 | 0.001 | −0.552 | 0.002 |
| Level of disclosure of the disease (Reference = yes) | ||||
| No | −0.002 | 0.003 | −0.102 | 0.003 |
| WHO stages (Reference = Stage IV) | ||||
| Stage I | 0.151 | 0.002 | 0.251 | 0.002 |
| Stage II | 0.1567 | 0.032 | 0.157 | 0.032 |
| Stage III | 0.1381 | 0.231 | 0.438 | 0.031 |
| Time | 0.021 | 0.001 | 0.121 | 0.021 |
| Var ( | 0.882 | 0.032 | 0.862 | 0.023 |
| Var ( | 0.021 | 0.043 | 0.011 | 0.005 |
| Cov ( | - 0.054 | 0.032 | - 0.064 | 0.006 |
| Corr ( | −0.821 | 0.021 | −0.731 | 0.001 |
| Survival sub models | ||||
| Intercept | 1.202 | 0.003 | 1.402 | 0.004 |
| Age | −0.006 | 0.003 | −0.036 | 0.005 |
| Baseline CD4 | 0.004 | 0.008 | 0.002 | 0.008 |
| Marital Status (Reference = without partner) | ||||
| With partner | 0.007 | 0.003 | 0.005 | 0.003 |
| Sex (Reference = male) | ||||
| Female | 0.034 | 0.004 | 0.023 | 0.003 |
| Without cell phone | −0.001 | 0.004 | − 0.001 | 0.004 |
| Level of adherence (Reference = Good adherence) | ||||
| Poor adherence | − 0.523 | 0.004 | − 0.483 | 0.002 |
| Fair adherence | −0.452 | 0.001 | −0.552 | 0.002 |
| Level of disclosure the disease (Reference = yes) | ||||
| No | − 0.002 | 0.003 | − 0.102 | 0.003 |
| WHO stages (Reference = Stage IV) | ||||
| Stage I | 0.151 | 0.002 | 0.251 | 0.002 |
| Stage II | 0.157 | 0.032 | 0.157 | 0.032 |
| Stage III | 0.138 | 0.231 | 0.438 | 0.031 |
| Time(visiting time) | 0.021 | 0.001 | 0.121 | 0.021 |
| | −2.324 | 0.005 | ||
| | 0.051 | 0.003 | ||
| | 0.654 | 0.004 | 0.864 | 0.003 |
Average fluctuation of CD4 cell count and Hazard Ratio estimates for final selected joint models
| parameter | Parameter estimate | Hazard Ratio (HR) estimate. | ||
|---|---|---|---|---|
| Average fluctuation | 95% Credible interval | HR | 95% Credible intervals | |
| Intercept | −4.350 | (−7.435, −2.856) | 0.1295 | (0.082, 0.454) |
| Age | −0.006 | (−0.003, −0.019) | 0.0362 | (0.009, 0.052) |
| Weight | 0.001 | (−0.008, 0.002) | 0.0056 | (0.001,0.008) |
| Baseline CD4 count | 0.004 | (0.001, 0.025) | 0.0015 | (0.001,0.002) |
| Marital Status (Reference = without partner) | ||||
| With partner | 0.007 | (0.003, 0.009) | 0.005 | (0.003, 0.008) |
| Sex (Reference = male) | ||||
| Female | 0.034 | (0.004,0.067) | 0.023 | (0.003,0.075) |
| Ownership of cell phone (Reference = With phone) | ||||
| Without cell phone | −0.006 | (−0.004, − 0.024) | 0.007 | (0.004, 0.009) |
| Level of adherence (Reference = Good adherence) | ||||
| Poor adherence | −0.523 | (− 0.644, − 0.235) | 0.483 | (0.002, 0.621) |
| Fair adherence | −0.452 | (− 0.671, − 0.253) | 0.552 | (0.092,0.831) |
| Level of disclosure of the disease (Reference = yes) | ||||
| No | −0.002 | (− 0.073, − 0.001) | 0.1020 | (0.003,0.324) |
| WHO stages (Reference = Stage IV) | ||||
| Stage I | 0.151 | (− 0.002, 0.246) | 0.2511 | (0.081, 0.452) |
| Stage II | 0.157 | (0.032, 0.224) | 0.1567 | (0.092, 0.421) |
| Stage III | 0.138 | (−0.231, 0.231) | 0.4381 | (0.231, 0.643) |
| Time | 0.021 | (0.001, 0.064) | 0.1209 | (0.091, 0.241) |
| | −2.965 | (−4.547, −1.234) | 0.0341 | (0.010, 0.067) |
| | 0.653 | (0.254, 0.923) | 1.7342 | (1.234, 1.966) |