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Literature DB >> 29702634

Microbiology: making the best of PCR bias.

Michael Eisenstein.

Abstract

Mesh：

Substances：
DNA, Bacterial

Year: 2018 PMID： 29702634 DOI： 10.1038/nmeth.4683

Source DB: PubMed Journal: Nat Methods ISSN： 1548-7091 Impact factor: 28.547

× No keyword cloud information.

6 in total

1. Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples.

Authors: Alma E Parada; David M Needham; Jed A Fuhrman
Journal: Environ Microbiol Date: 2015-10-14 Impact factor: 5.491

2. Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies.

Authors: Daryl M Gohl; Pajau Vangay; John Garbe; Allison MacLean; Adam Hauge; Aaron Becker; Trevor J Gould; Jonathan B Clayton; Timothy J Johnson; Ryan Hunter; Dan Knights; Kenneth B Beckman
Journal: Nat Biotechnol Date: 2016-07-25 Impact factor: 54.908

3. Metagenomics uncovers gaps in amplicon-based detection of microbial diversity.

Authors: Emiley A Eloe-Fadrosh; Natalia N Ivanova; Tanja Woyke; Nikos C Kyrpides
Journal: Nat Microbiol Date: 2016-02-01 Impact factor: 17.745

4. Phylogenetic structure of the prokaryotic domain: the primary kingdoms.

Authors: C R Woese; G E Fox
Journal: Proc Natl Acad Sci U S A Date: 1977-11 Impact factor: 11.205

5. Retrieval of a million high-quality, full-length microbial 16S and 18S rRNA gene sequences without primer bias.

Authors: Søren M Karst; Morten S Dueholm; Simon J McIlroy; Rasmus H Kirkegaard; Per H Nielsen; Mads Albertsen
Journal: Nat Biotechnol Date: 2018-01-01 Impact factor: 54.908

6. Taxon Disappearance from Microbiome Analysis Reinforces the Value of Mock Communities as a Standard in Every Sequencing Run.

Authors: Yi-Chun Yeh; David M Needham; Ella T Sieradzki; Jed A Fuhrman
Journal: mSystems Date: 2018-04-03 Impact factor: 6.496

6 in total

8 in total

Review 1. Beyond Biodiversity: Can Environmental DNA (eDNA) Cut It as a Population Genetics Tool?

Authors: Clare I M Adams; Michael Knapp; Neil J Gemmell; Gert-Jan Jeunen; Michael Bunce; Miles D Lamare; Helen R Taylor
Journal: Genes (Basel) Date: 2019-03-01 Impact factor: 4.096

2. Rheum tanguticum Alleviates Cognitive Impairment in APP/PS1 Mice by Regulating Drug-Responsive Bacteria and Their Corresponding Microbial Metabolites.

Authors: Demin Gao; Huizhen Zhao; Zhihui Yin; Chen Han; Ying Wang; Gan Luo; Xiaoyan Gao
Journal: Front Pharmacol Date: 2021-12-15 Impact factor: 5.810

3. Comparison of 16S rDNA Amplicon Sequencing With the Culture Method for Diagnosing Causative Pathogens in Bacterial Corneal Infections.

Authors: Na An; Changhao Wang; Xiuhong Dou; Xianning Liu; Jie Wu; Yan Cheng
Journal: Transl Vis Sci Technol Date: 2022-02-01 Impact factor: 3.283

Microbiology: making the best of PCR bias.

1. Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples.

2. Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies.

3. Metagenomics uncovers gaps in amplicon-based detection of microbial diversity.

4. Phylogenetic structure of the prokaryotic domain: the primary kingdoms.

5. Retrieval of a million high-quality, full-length microbial 16S and 18S rRNA gene sequences without primer bias.

6. Taxon Disappearance from Microbiome Analysis Reinforces the Value of Mock Communities as a Standard in Every Sequencing Run.

Review 1. Beyond Biodiversity: Can Environmental DNA (eDNA) Cut It as a Population Genetics Tool?

2. Rheum tanguticum Alleviates Cognitive Impairment in APP/PS1 Mice by Regulating Drug-Responsive Bacteria and Their Corresponding Microbial Metabolites.

3. Comparison of 16S rDNA Amplicon Sequencing With the Culture Method for Diagnosing Causative Pathogens in Bacterial Corneal Infections.

4. Functional and Phylogenetic Characterization of Bacteria in Bovine Rumen Using Fractionation of Ruminal Fluid.

5. Be aware of the allele-specific bias and compositional effects in multi-template PCR.

6. Disentangling the Complexity of the Rumen Microbial Diversity Through Fractionation Using a Sucrose Density Gradient.

7. Measuring and mitigating PCR bias in microbiota datasets.

8. Exploring the Archaeome: Detection of Archaeal Signatures in the Human Body.