Literature DB >> 29701317

Omics research project on prospective cohort studies from the Tohoku Medical Megabank Project.

Seizo Koshiba1,2, Ikuko Motoike1,3, Daisuke Saigusa1,2, Jin Inoue1,2, Matsuyuki Shirota1,2, Yasutake Katoh1, Fumiki Katsuoka1,2, Inaho Danjoh1,2, Atsushi Hozawa1,2, Shinichi Kuriyama1,2,4, Naoko Minegishi1,2, Masao Nagasaki1,2,3, Takako Takai-Igarashi1,2, Soichi Ogishima1,2, Nobuo Fuse1,2, Shigeo Kure1,2, Gen Tamiya1,2,5, Osamu Tanabe1,2, Jun Yasuda1,2, Kengo Kinoshita1,3,6, Masayuki Yamamoto1,2.   

Abstract

Population-based prospective cohort studies are indispensable for modern medical research as they provide important knowledge on the influences of many kinds of genetic and environmental factors on the cause of disease. Although traditional cohort studies are mainly conducted using questionnaires and physical examinations, modern cohort studies incorporate omics and genomic approaches to obtain comprehensive physical information, including genetic information. Here, we report the design and midterm results of multi-omics analysis on population-based prospective cohort studies from the Tohoku Medical Megabank (TMM) Project. We have incorporated genomic and metabolomic studies in the TMM cohort study as both metabolome and genome analyses are suitable for high-throughput analysis of large-scale cohort samples. Moreover, an association study between the metabolome and genome show that metabolites are an important intermediate phenotype connecting genetic and lifestyle factors to physical and pathologic phenotypes. We apply our metabolome and genome analyses to large-scale cohort samples in the following studies.
© 2018 The Authors. Genes to Cells published by Molecular Biology Society of Japan and John Wiley & Sons Australia, Ltd.

Keywords:  Tohoku Medical Megabank; association study; cohort; jMorp; metabolome; omics; proteome

Mesh:

Year:  2018        PMID: 29701317     DOI: 10.1111/gtc.12588

Source DB:  PubMed          Journal:  Genes Cells        ISSN: 1356-9597            Impact factor:   1.891


  13 in total

1.  Novel candidates of pathogenic variants of the BRCA1 and BRCA2 genes from a dataset of 3,552 Japanese whole genomes (3.5KJPNv2).

Authors:  Hideki Tokunaga; Keita Iida; Atsushi Hozawa; Soichi Ogishima; Yoh Watanabe; Shogo Shigeta; Muneaki Shimada; Yumi Yamaguchi-Kabata; Shu Tadaka; Fumiki Katsuoka; Shin Ito; Kazuki Kumada; Yohei Hamanaka; Nobuo Fuse; Kengo Kinoshita; Masayuki Yamamoto; Nobuo Yaegashi; Jun Yasuda
Journal:  PLoS One       Date:  2021-01-11       Impact factor: 3.240

2.  Identification of novel biomarkers of hepatocellular carcinoma by high-definition mass spectrometry: Ultrahigh-performance liquid chromatography quadrupole time-of-flight mass spectrometry and desorption electrospray ionization mass spectrometry imaging.

Authors:  Koshi Nagai; Baasanjav Uranbileg; Zhen Chen; Amane Fujioka; Takahiro Yamazaki; Yotaro Matsumoto; Hiroki Tsukamoto; Hitoshi Ikeda; Yutaka Yatomi; Hitoshi Chiba; Shu-Ping Hui; Toru Nakazawa; Ritsumi Saito; Seizo Koshiba; Junken Aoki; Daisuke Saigusa; Yoshihisa Tomioka
Journal:  Rapid Commun Mass Spectrom       Date:  2019-11-06       Impact factor: 2.419

3.  Nrf2 contributes to the weight gain of mice during space travel.

Authors:  Takafumi Suzuki; Akira Uruno; Akane Yumoto; Keiko Taguchi; Mikiko Suzuki; Nobuhiko Harada; Rie Ryoke; Eriko Naganuma; Nanae Osanai; Aya Goto; Hiromi Suda; Ryan Browne; Akihito Otsuki; Fumiki Katsuoka; Michael Zorzi; Takahiro Yamazaki; Daisuke Saigusa; Seizo Koshiba; Takashi Nakamura; Satoshi Fukumoto; Hironobu Ikehata; Keizo Nishikawa; Norio Suzuki; Ikuo Hirano; Ritsuko Shimizu; Tetsuya Oishi; Hozumi Motohashi; Hirona Tsubouchi; Risa Okada; Takashi Kudo; Michihiko Shimomura; Thomas W Kensler; Hiroyasu Mizuno; Masaki Shirakawa; Satoru Takahashi; Dai Shiba; Masayuki Yamamoto
Journal:  Commun Biol       Date:  2020-09-08

4.  Study Profile of the Tohoku Medical Megabank Community-Based Cohort Study.

Authors:  Atsushi Hozawa; Kozo Tanno; Naoki Nakaya; Tomohiro Nakamura; Naho Tsuchiya; Takumi Hirata; Akira Narita; Mana Kogure; Kotaro Nochioka; Ryohei Sasaki; Nobuyuki Takanashi; Kotaro Otsuka; Kiyomi Sakata; Shinichi Kuriyama; Masahiro Kikuya; Osamu Tanabe; Junichi Sugawara; Kichiya Suzuki; Yoichi Suzuki; Eiichi N Kodama; Nobuo Fuse; Hideyasu Kiyomoto; Hiroaki Tomita; Akira Uruno; Yohei Hamanaka; Hirohito Metoki; Mami Ishikuro; Taku Obara; Tomoko Kobayashi; Kazuyuki Kitatani; Takako Takai-Igarashi; Soichi Ogishima; Mamoru Satoh; Hideki Ohmomo; Akito Tsuboi; Shinichi Egawa; Tadashi Ishii; Kiyoshi Ito; Sadayoshi Ito; Yasuyuki Taki; Naoko Minegishi; Naoto Ishii; Masao Nagasaki; Kazuhiko Igarashi; Seizo Koshiba; Ritsuko Shimizu; Gen Tamiya; Keiko Nakayama; Hozumi Motohashi; Jun Yasuda; Atsushi Shimizu; Tsuyoshi Hachiya; Yuh Shiwa; Teiji Tominaga; Hiroshi Tanaka; Kotaro Oyama; Ryoichi Tanaka; Hiroshi Kawame; Akimune Fukushima; Yasushi Ishigaki; Tomoharu Tokutomi; Noriko Osumi; Tadao Kobayashi; Fuji Nagami; Hiroaki Hashizume; Tomohiko Arai; Yoshio Kawaguchi; Shinichi Higuchi; Masaki Sakaida; Ryujin Endo; Satoshi Nishizuka; Ichiro Tsuji; Jiro Hitomi; Motoyuki Nakamura; Kuniaki Ogasawara; Nobuo Yaegashi; Kengo Kinoshita; Shigeo Kure; Akio Sakai; Seiichiro Kobayashi; Kenji Sobue; Makoto Sasaki; Masayuki Yamamoto
Journal:  J Epidemiol       Date:  2020-01-11       Impact factor: 3.211

5.  Oral Microbiome Analysis in Prospective Genome Cohort Studies of the Tohoku Medical Megabank Project.

Authors:  Sakae Saito; Yuichi Aoki; Toru Tamahara; Maki Goto; Hiroyuki Matsui; Junko Kawashima; Inaho Danjoh; Atsushi Hozawa; Shinichi Kuriyama; Yoichi Suzuki; Nobuo Fuse; Shigeo Kure; Riu Yamashita; Osamu Tanabe; Naoko Minegishi; Kengo Kinoshita; Akito Tsuboi; Ritsuko Shimizu; Masayuki Yamamoto
Journal:  Front Cell Infect Microbiol       Date:  2021-01-29       Impact factor: 5.293

6.  The return of individual genomic results to research participants: design and pilot study of Tohoku Medical Megabank Project.

Authors:  Hiroshi Kawame; Akimune Fukushima; Nobuo Fuse; Fuji Nagami; Yoichi Suzuki; Mika Sakurai-Yageta; Jun Yasuda; Yumi Yamaguchi-Kabata; Kengo Kinoshita; Soichi Ogishima; Takako Takai; Shinichi Kuriyama; Atsushi Hozawa; Naoki Nakaya; Tomohiro Nakamura; Naoko Minegishi; Junichi Sugawara; Kichiya Suzuki; Hiroaki Tomita; Akira Uruno; Tomoko Kobayashi; Yayoi Aizawa; Tomoharu Tokutomi; Kayono Yamamoto; Kinuko Ohneda; Shigeo Kure; Yoko Aoki; Hideki Katagiri; Yasushi Ishigaki; Shojiro Sawada; Makoto Sasaki; Masayuki Yamamoto
Journal:  J Hum Genet       Date:  2021-07-08       Impact factor: 3.172

7.  Integrated analysis of human genetic association study and mouse transcriptome suggests LBH and SHF genes as novel susceptible genes for amyloid-β accumulation in Alzheimer's disease.

Authors:  Yumi Yamaguchi-Kabata; Takashi Morihara; Tomoyuki Ohara; Toshiharu Ninomiya; Atsushi Takahashi; Hiroyasu Akatsu; Yoshio Hashizume; Noriyuki Hayashi; Daichi Shigemizu; Keith A Boroevich; Manabu Ikeda; Michiaki Kubo; Masatoshi Takeda; Tatsuhiko Tsunoda
Journal:  Hum Genet       Date:  2018-07-13       Impact factor: 4.132

Review 8.  Decoding Plant-Environment Interactions That Influence Crop Agronomic Traits.

Authors:  Keiichi Mochida; Ryuei Nishii; Takashi Hirayama
Journal:  Plant Cell Physiol       Date:  2020-08-01       Impact factor: 4.927

9.  Cohort Profile: Tohoku Medical Megabank Project Birth and Three-Generation Cohort Study (TMM BirThree Cohort Study): rationale, progress and perspective.

Authors:  Shinichi Kuriyama; Hirohito Metoki; Masahiro Kikuya; Taku Obara; Mami Ishikuro; Chizuru Yamanaka; Masato Nagai; Hiroko Matsubara; Tomoko Kobayashi; Junichi Sugawara; Gen Tamiya; Atsushi Hozawa; Naoki Nakaya; Naho Tsuchiya; Tomohiro Nakamura; Akira Narita; Mana Kogure; Takumi Hirata; Ichiro Tsuji; Fuji Nagami; Nobuo Fuse; Tomohiko Arai; Yoshio Kawaguchi; Shinichi Higuchi; Masaki Sakaida; Yoichi Suzuki; Noriko Osumi; Keiko Nakayama; Kiyoshi Ito; Shinichi Egawa; Koichi Chida; Eiichi Kodama; Hideyasu Kiyomoto; Tadashi Ishii; Akito Tsuboi; Hiroaki Tomita; Yasuyuki Taki; Hiroshi Kawame; Kichiya Suzuki; Naoto Ishii; Soichi Ogishima; Satoshi Mizuno; Takako Takai-Igarashi; Naoko Minegishi; Jun Yasuda; Kazuhiko Igarashi; Ritsuko Shimizu; Masao Nagasaki; Osamu Tanabe; Seizo Koshiba; Hiroaki Hashizume; Hozumi Motohashi; Teiji Tominaga; Sadayoshi Ito; Kozo Tanno; Kiyomi Sakata; Atsushi Shimizu; Jiro Hitomi; Makoto Sasaki; Kengo Kinoshita; Hiroshi Tanaka; Tadao Kobayashi; Shigeo Kure; Nobuo Yaegashi; Masayuki Yamamoto
Journal:  Int J Epidemiol       Date:  2020-02-01       Impact factor: 7.196

10.  Identification of critical genetic variants associated with metabolic phenotypes of the Japanese population.

Authors:  Seizo Koshiba; Ikuko N Motoike; Daisuke Saigusa; Jin Inoue; Yuichi Aoki; Shu Tadaka; Matsuyuki Shirota; Fumiki Katsuoka; Gen Tamiya; Naoko Minegishi; Nobuo Fuse; Kengo Kinoshita; Masayuki Yamamoto
Journal:  Commun Biol       Date:  2020-11-11
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