Literature DB >> 29697258

Acid···Amide Supramolecular Synthon in Cocrystals: From Spectroscopic Detection to Property Engineering.

Subhankar Saha1, Gautam R Desiraju1.   

Abstract

The acid···amide dimer heterosynthon in cocrystals of aromatic acids and primary amides is identified by marker peaks in the IR spectra that are characteristic of individual N-H···O and O-H···O interactions and also of the extended synthon. The O-H···O hydrogen bond is crucial to heterodimer formation in contrast to the N-H···O bond. A combinatorial study, tuning the chemical nature of acid and amide functionalities, leads to 22 cocrystals out of 36 crystallization attempts. Four quadrants I-IV are defined based on acidity and basicity of the acid and amide components. The strong acid-strong base combination in quadrant I favors the planar acid···amide heterodimer in its eight cocrystals. Quadrant IV with its weak acid-weak base combination is the least favored for the planar heterosynthon and synthon diversity is observed in the eight cocrystals obtained. The strong-weak and weak-strong combinations in quadrants II and III are expectedly ambivalent. This exercise highlights the effect of molecular features on supramolecular behavior. Quadrant I crystals, with their propensity for the planar acid···amide heterodimer are suitable for the engineering of crystals that can be sheared. This quadrant favors the formation of elastic crystals too. The overall result is that 57% (4 in 7) of all crystals in this quadrant are deformable, compared with 14% (1 in 7) in the three other quadrants. This work is a complete crystal engineering exercise from synthon identification to a particular desired crystal packing to property selection. One can virtually anticipate the mechanical property of a putative acid···amide cocrystal from a knowledge of just the molecular structures of the constituent acid and amide molecules.

Entities:  

Year:  2018        PMID: 29697258     DOI: 10.1021/jacs.8b02435

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  6 in total

1.  Optimizing a coarse-grained space for approximate normal-mode vibrations of molecular heterodimers.

Authors:  Makoto Isogai; Masataka Seshimo; Hirohiko Houjou
Journal:  J Mol Model       Date:  2021-04-27       Impact factor: 1.810

2.  Efficient electron transfer across hydrogen bond interfaces by proton-coupled and -uncoupled pathways.

Authors:  Tao Cheng; Dong Xue Shen; Miao Meng; Suman Mallick; Lijiu Cao; Nathan J Patmore; Hong Li Zhang; Shan Feng Zou; Huo Wen Chen; Yi Qin; Yi Yang Wu; Chun Y Liu
Journal:  Nat Commun       Date:  2019-04-04       Impact factor: 14.919

3.  Consistency and variability of cocrystals containing positional isomers: the self-assembly evolution mechanism of supramolecular synthons of cresol-piperazine.

Authors:  Na Wang; Xin Huang; Lihang Chen; Jinyue Yang; Xin Li; Jiayuan Ma; Ying Bao; Fei Li; Qiuxiang Yin; Hongxun Hao
Journal:  IUCrJ       Date:  2019-10-09       Impact factor: 4.769

4.  Improved Manufacturability and In Vivo Comparative Pharmacokinetics of Dapagliflozin Cocrystals in Beagle Dogs and Human Volunteers.

Authors:  Sangho Cho; Jeongwook Lee; Yongwon Yoo; Minyong Cho; Seil Sohn; Beom-Jin Lee
Journal:  Pharmaceutics       Date:  2021-01-07       Impact factor: 6.321

5.  Isomorphism: 'molecular similarity to crystal structure similarity' in multicomponent forms of analgesic drugs tolfenamic and mefenamic acid.

Authors:  Subham Ranjan; Ramesh Devarapalli; Sudeshna Kundu; Subhankar Saha; Shubham Deolka; Venu R Vangala; C Malla Reddy
Journal:  IUCrJ       Date:  2020-01-07       Impact factor: 4.769

6.  Controlling thermal expansion within mixed cocrystals by tuning molecular motion capability.

Authors:  Xiaodan Ding; Daniel K Unruh; Ryan H Groeneman; Kristin M Hutchins
Journal:  Chem Sci       Date:  2020-06-05       Impact factor: 9.825

  6 in total

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