Literature DB >> 29696744

NGS testing for cardiomyopathy: Utility of adding RASopathy-associated genes.

Ozge Ceyhan-Birsoy1,2, Maya M Miatkowski1, Elizabeth Hynes1, Birgit H Funke1,3, Heather Mason-Suares1,4.   

Abstract

RASopathies include a group of syndromes caused by pathogenic germline variants in RAS-MAPK pathway genes and typically present with facial dysmorphology, cardiovascular disease, and musculoskeletal anomalies. Recently, variants in RASopathy-associated genes have been reported in individuals with apparently nonsyndromic cardiomyopathy, suggesting that subtle features may be overlooked. To determine the utility and burden of adding RASopathy-associated genes to cardiomyopathy panels, we tested 11 RASopathy-associated genes by next-generation sequencing (NGS), including NGS-based copy number variant assessment, in 1,111 individuals referred for genetic testing for hypertrophic cardiomyopathy (HCM) or dilated cardiomyopathy (DCM). Disease-causing variants were identified in 0.6% (four of 692) of individuals with HCM, including three missense variants in the PTPN11, SOS1, and BRAF genes. Overall, 36 variants of uncertain significance (VUSs) were identified, averaging ∼3VUSs/100 cases. This study demonstrates that adding a subset of the RASopathy-associated genes to cardiomyopathy panels will increase clinical diagnoses without significantly increasing the number of VUSs/case.
© 2018 Wiley Periodicals, Inc.

Entities:  

Keywords:  BRAF; Noonan syndrome; PTPN11; RAF1 gain; RASopathy; SOS1; cardio-facio-cutaneous (CFC) syndrome; dilated cardiomyopathy (DCM); hypertrophic cardiomyopathy (HCM)

Mesh:

Substances:

Year:  2018        PMID: 29696744      PMCID: PMC8191452          DOI: 10.1002/humu.23535

Source DB:  PubMed          Journal:  Hum Mutat        ISSN: 1059-7794            Impact factor:   4.878


  33 in total

1.  Noonan-like/multiple giant cell lesion syndrome in two adult patients with SOS1 gene mutations.

Authors:  Ryszard Slezak; Klaudiusz Luczak; Vera Kalscheuer; Thomas E Neumann; Maria M Sasiadek
Journal:  Clin Dysmorphol       Date:  2010-07       Impact factor: 0.816

2.  Gain-of-function mutations in RIT1 cause Noonan syndrome, a RAS/MAPK pathway syndrome.

Authors:  Yoko Aoki; Tetsuya Niihori; Toshihiro Banjo; Nobuhiko Okamoto; Seiji Mizuno; Kenji Kurosawa; Tsutomu Ogata; Fumio Takada; Michihiro Yano; Toru Ando; Tadataka Hoshika; Christopher Barnett; Hirofumi Ohashi; Hiroshi Kawame; Tomonobu Hasegawa; Takahiro Okutani; Tatsuo Nagashima; Satoshi Hasegawa; Ryo Funayama; Takeshi Nagashima; Keiko Nakayama; Shin-Ichi Inoue; Yusuke Watanabe; Toshihiko Ogura; Yoichi Matsubara
Journal:  Am J Hum Genet       Date:  2013-06-20       Impact factor: 11.025

3.  Retrospective study of prenatal ultrasound findings in newborns with a Noonan spectrum disorder.

Authors:  Fahad Hakami; Mitchell W Dillon; Matthew Lebo; Heather Mason-Suares
Journal:  Prenat Diagn       Date:  2016-03-28       Impact factor: 3.050

4.  Early expression of a malignant phenotype of familial hypertrophic cardiomyopathy associated with a Gly716Arg myosin heavy chain mutation in a Korean family.

Authors:  T H Hwang; W H Lee; A Kimura; M Satoh; T Nakamura; M K Kim; S K Choi; J E Park
Journal:  Am J Cardiol       Date:  1998-12-15       Impact factor: 2.778

5.  A novel rasopathy caused by recurrent de novo missense mutations in PPP1CB closely resembles Noonan syndrome with loose anagen hair.

Authors:  Karen W Gripp; Kimberly A Aldinger; James T Bennett; Laura Baker; Jessica Tusi; Nina Powell-Hamilton; Deborah Stabley; Katia Sol-Church; Andrew E Timms; William B Dobyns
Journal:  Am J Med Genet A       Date:  2016-06-05       Impact factor: 2.802

6.  SOS1 is the second most common Noonan gene but plays no major role in cardio-facio-cutaneous syndrome.

Authors:  Martin Zenker; Denise Horn; Dagmar Wieczorek; Judith Allanson; Silke Pauli; Ineke van der Burgt; Helmuth-Guenther Doerr; Harald Gaspar; Michael Hofbeck; Gabriele Gillessen-Kaesbach; Andreas Koch; Peter Meinecke; Stefan Mundlos; Anja Nowka; Anita Rauch; Silke Reif; Christian von Schnakenburg; Heide Seidel; Lars-Erik Wehner; Christiane Zweier; Susanne Bauhuber; Verena Matejas; Christian P Kratz; Christoph Thomas; Kerstin Kutsche
Journal:  J Med Genet       Date:  2007-06-23       Impact factor: 6.318

7.  Prevalence of sequence variants in the RAS-mitogen activated protein kinase signaling pathway in pre-adolescent children with hypertrophic cardiomyopathy.

Authors:  Juan Pablo Kaski; Petros Syrris; Adam Shaw; Krisztina Zuborne Alapi; Viviana Cordeddu; Maria Teresa Tome Esteban; Sharon Jenkins; Michael Ashworth; Peter Hammond; Marco Tartaglia; William J McKenna; Perry M Elliott
Journal:  Circ Cardiovasc Genet       Date:  2012-05-15

8.  Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Authors:  Sue Richards; Nazneen Aziz; Sherri Bale; David Bick; Soma Das; Julie Gastier-Foster; Wayne W Grody; Madhuri Hegde; Elaine Lyon; Elaine Spector; Karl Voelkerding; Heidi L Rehm
Journal:  Genet Med       Date:  2015-03-05       Impact factor: 8.822

9.  ClinGen's RASopathy Expert Panel consensus methods for variant interpretation.

Authors:  Bruce D Gelb; Hélène Cavé; Mitchell W Dillon; Karen W Gripp; Jennifer A Lee; Heather Mason-Suares; Katherine A Rauen; Bradley Williams; Martin Zenker; Lisa M Vincent
Journal:  Genet Med       Date:  2018-03-01       Impact factor: 8.822

10.  Next generation sequencing-based copy number analysis reveals low prevalence of deletions and duplications in 46 genes associated with genetic cardiomyopathies.

Authors:  Ozge Ceyhan-Birsoy; Trevor J Pugh; Mark J Bowser; Elizabeth Hynes; Ashley L Frisella; Lisa M Mahanta; Matt S Lebo; Sami S Amr; Birgit H Funke
Journal:  Mol Genet Genomic Med       Date:  2015-12-16       Impact factor: 2.183

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  4 in total

1.  SOS1 Gain-of-Function Variants in Dilated Cardiomyopathy.

Authors:  Jason R Cowan; Lorien Salyer; Nathan T Wright; Daniel D Kinnamon; Pedro Amaya; Elizabeth Jordan; Michael J Bamshad; Deborah A Nickerson; Ray E Hershberger
Journal:  Circ Genom Precis Med       Date:  2020-06-30

2.  Clinical and mutation profile of pediatric patients with RASopathy-associated hypertrophic cardiomyopathy: results from a Chinese cohort.

Authors:  Hao Chen; Xin Li; Xiaoliang Liu; Jian Wang; Zhen Zhang; Jinjin Wu; Meirong Huang; Ying Guo; Fen Li; Xiumin Wang; Lijun Fu
Journal:  Orphanet J Rare Dis       Date:  2019-02-07       Impact factor: 4.123

Review 3.  Evaluation of cardiac hypertrophy in the setting of sudden cardiac death.

Authors:  Kristopher S Cunningham; Danna A Spears; Melanie Care
Journal:  Forensic Sci Res       Date:  2019-08-19

4.  Expanding the Noonan spectrum/RASopathy NGS panel: Benefits of adding NF1 and SPRED1.

Authors:  Leora Witkowski; Mitchell W Dillon; Elissa Murphy; Matthew S Lebo; Heather Mason-Suares
Journal:  Mol Genet Genomic Med       Date:  2020-02-27       Impact factor: 2.183

  4 in total

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