Literature DB >> 29692960

Whole genome shotgun sequence of Bacillus paralicheniformis strain KMS 80, a rhizobacterial endophyte isolated from rice (Oryza sativa L.).

Kannepalli Annapurna1, Venkadasamy Govindasamy1, Meenakshi Sharma1, Arpita Ghosh2, Surendra K Chikara2.   

Abstract

Bacillus paralicheniformis strain KMS 80 (MTCC No. 12704) is an isolate from the root tissues of rice (Oryza sativa L.) that displays biological nitrogen fixation and plant growth promoting abilities. Here, we report the complete genome sequence of this strain, which contains 4,566,040 bp, 4424 protein-coding genes, 8692 promoter sequences, 67 tRNAs, 20 rRNA genes with six copies of 5S rRNAs along with a single copy of 16S-23S rRNA and genome average GC-content of 45.50%. Twenty one genes involved in nitrogen metabolism pathway and two main transcriptional factor genes, glnR and tnrA responsible for regulation of nitrogen fixation in Bacillus sp. were predicted from the whole genome of strain KMS 80. Analysis of the ~ 4.57 Mb genome sequence will give support to understand the genetic determinants of host range, endophytic colonization behaviour as well as to enhance endophytic nitrogen fixation and other plant beneficial role of B. paralicheniformis in rice.

Entities:  

Keywords:  Bacillus paralicheniformis; Diazotroph; Endophyte; Illumina; NGS; Rice (Oryza sativa L.); Whole genome sequencing

Year:  2018        PMID: 29692960      PMCID: PMC5910378          DOI: 10.1007/s13205-018-1242-y

Source DB:  PubMed          Journal:  3 Biotech        ISSN: 2190-5738            Impact factor:   2.406


  12 in total

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Journal:  Nucleic Acids Res       Date:  2004-01-02       Impact factor: 16.971

2.  Bacillus subtilis GlnR contains an autoinhibitory C-terminal domain required for the interaction with glutamine synthetase.

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3.  Draft genome comparison of representatives of the three dominant genotype groups of dairy Bacillus licheniformis strains.

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Journal:  Appl Environ Microbiol       Date:  2014-03-21       Impact factor: 4.792

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Journal:  Curr Opin Plant Biol       Date:  2011-04-30       Impact factor: 7.834

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Journal:  Nat Biotechnol       Date:  2012-10       Impact factor: 54.908

6.  Bacillus paralicheniformis sp. nov., isolated from fermented soybean paste.

Authors:  Christopher A Dunlap; Soon-Wo Kwon; Alejandro P Rooney; Soo-Jin Kim
Journal:  Int J Syst Evol Microbiol       Date:  2015-10       Impact factor: 2.747

7.  Functional analysis of the carboxy-terminal region of Bacillus subtilis TnrA, a MerR family protein.

Authors:  Lewis V Wray; Susan H Fisher
Journal:  J Bacteriol       Date:  2006-11-03       Impact factor: 3.490

8.  Prodigal: prokaryotic gene recognition and translation initiation site identification.

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Journal:  BMC Bioinformatics       Date:  2010-03-08       Impact factor: 3.169

9.  Genotyping of B. licheniformis based on a novel multi-locus sequence typing (MLST) scheme.

Authors:  Elisabeth H Madslien; Jaran S Olsen; Per E Granum; Janet M Blatny
Journal:  BMC Microbiol       Date:  2012-10-10       Impact factor: 3.605

10.  Draft Genome Sequence of Pseudomonas stutzeri Strain KMS 55, an Endophytic Diazotroph Isolated from Rice Roots.

Authors:  Kannepalli Annapurna; Venkadasamy Govindasamy; Meenakshi Sharma; Yuvika Rajrana; Karivaradharajan Swarnalakshmi; Sangeeta Paul; Arpita Ghosh; Surendra K Chikara
Journal:  Genome Announc       Date:  2017-10-05
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Journal:  Microbiol Resour Announc       Date:  2020-05-14

2.  Update of the list of QPS-recommended biological agents intentionally added to food or feed as notified to EFSA 14: suitability of taxonomic units notified to EFSA until March 2021.

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Journal:  EFSA J       Date:  2021-07-07

3.  Genomic assessment of Stenotrophomonas indicatrix for improved sunflower plant.

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Review 4.  Harnessing Bacterial Endophytes for Promotion of Plant Growth and Biotechnological Applications: An Overview.

Authors:  Ahmed M Eid; Amr Fouda; Mohamed Ali Abdel-Rahman; Salem S Salem; Albaraa Elsaied; Ralf Oelmüller; Mohamed Hijri; Arnab Bhowmik; Amr Elkelish; Saad El-Din Hassan
Journal:  Plants (Basel)       Date:  2021-05-07
  4 in total

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