Literature DB >> 29691322

Transient pausing by RNA polymerase II.

David H Price1.   

Abstract

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Year:  2018        PMID： 29691322      PMCID： PMC5949015          DOI： 10.1073/pnas.1805129115

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  17 in total

1.  Control of formation of two distinct classes of RNA polymerase II elongation complexes.

Authors:  N F Marshall; D H Price
Journal:  Mol Cell Biol       Date:  1992-05       Impact factor: 4.272

2.  Paused RNA polymerase II inhibits new transcriptional initiation.

Authors:  Wanqing Shao; Julia Zeitlinger
Journal:  Nat Genet       Date:  2017-05-15       Impact factor: 38.330

Review 3.  Epigenetic balance of gene expression by Polycomb and COMPASS families.

Authors:  Andrea Piunti; Ali Shilatifard
Journal:  Science       Date:  2016-06-03       Impact factor: 47.728

4.  NELF-mediated stalling of Pol II can enhance gene expression by blocking promoter-proximal nucleosome assembly.

Authors:  Daniel A Gilchrist; Sergei Nechaev; Chanhyo Lee; Saikat Kumar B Ghosh; Jennifer B Collins; Leping Li; David S Gilmour; Karen Adelman
Journal:  Genes Dev       Date:  2008-07-15       Impact factor: 11.361

5.  Kinetics of promoter Pol II on Hsp70 reveal stable pausing and key insights into its regulation.

Authors:  Martin S Buckley; Hojoong Kwak; Warren R Zipfel; John T Lis
Journal:  Genes Dev       Date:  2014-01-01       Impact factor: 11.361

6.  Genome-wide dynamics of Pol II elongation and its interplay with promoter proximal pausing, chromatin, and exons.

Authors:  Iris Jonkers; Hojoong Kwak; John T Lis
Journal:  Elife       Date:  2014-04-29       Impact factor: 8.140

7.  Genome-wide Single-Molecule Footprinting Reveals High RNA Polymerase II Turnover at Paused Promoters.

Authors:  Arnaud R Krebs; Dilek Imanci; Leslie Hoerner; Dimos Gaidatzis; Lukas Burger; Dirk Schübeler
Journal:  Mol Cell       Date:  2017-07-20       Impact factor: 17.970

8.  Widespread transcriptional pausing and elongation control at enhancers.

Authors:  Telmo Henriques; Benjamin S Scruggs; Michiko O Inouye; Ginger W Muse; Lucy H Williams; Adam B Burkholder; Christopher A Lavender; David C Fargo; Karen Adelman
Journal:  Genes Dev       Date:  2018-01-29       Impact factor: 11.361

9.  Oxidative stress rapidly stabilizes promoter-proximal paused Pol II across the human genome.

Authors:  Kyle A Nilson; Christine K Lawson; Nicholas J Mullen; Christopher B Ball; Benjamin M Spector; Jeffery L Meier; David H Price
Journal:  Nucleic Acids Res       Date:  2017-11-02       Impact factor: 16.971

10.  Live-cell analysis of endogenous GFP-RPB1 uncovers rapid turnover of initiating and promoter-paused RNA Polymerase II.

Authors:  Barbara Steurer; Roel C Janssens; Bart Geverts; Marit E Geijer; Franziska Wienholz; Arjan F Theil; Jiang Chang; Shannon Dealy; Joris Pothof; Wiggert A van Cappellen; Adriaan B Houtsmuller; Jurgen A Marteijn
Journal:  Proc Natl Acad Sci U S A       Date:  2018-04-09       Impact factor: 11.205
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  14 in total

Review 1.  Phase Separation and Transcription Regulation: Are Super-Enhancers and Locus Control Regions Primary Sites of Transcription Complex Assembly?

Authors:  Aishwarya Gurumurthy; Yong Shen; Eliot M Gunn; Jörg Bungert
Journal:  Bioessays       Date:  2018-11-30       Impact factor: 4.345

2.  PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC.

Authors:  Lisa-Marie Appel; Vedran Franke; Melania Bruno; Irina Grishkovskaya; Aiste Kasiliauskaite; Tanja Kaufmann; Ursula E Schoeberl; Martin G Puchinger; Sebastian Kostrhon; Carmen Ebenwaldner; Marek Sebesta; Etienne Beltzung; Karl Mechtler; Gen Lin; Anna Vlasova; Martin Leeb; Rushad Pavri; Alexander Stark; Altuna Akalin; Richard Stefl; Carrie Bernecky; Kristina Djinovic-Carugo; Dea Slade
Journal:  Nat Commun       Date:  2021-10-19       Impact factor: 14.919

Review 3.  RNA polymerase II pausing in development: orchestrating transcription.

Authors:  Abderhman Abuhashem; Vidur Garg; Anna-Katerina Hadjantonakis
Journal:  Open Biol       Date:  2022-01-05       Impact factor: 6.411

Review 4.  Regulation of Promoter Proximal Pausing of RNA Polymerase II in Metazoans.

Authors:  Roberta Dollinger; David S Gilmour
Journal:  J Mol Biol       Date:  2021-02-25       Impact factor: 6.151

5.  Transcript isoform sequencing reveals widespread promoter-proximal transcriptional termination in Arabidopsis.

Authors:  Quentin Angelo Thomas; Ryan Ard; Jinghan Liu; Bingnan Li; Jingwen Wang; Vicent Pelechano; Sebastian Marquardt
Journal:  Nat Commun       Date:  2020-05-22       Impact factor: 14.919

6.  Nucleotide Resolution Comparison of Transcription of Human Cytomegalovirus and Host Genomes Reveals Universal Use of RNA Polymerase II Elongation Control Driven by Dissimilar Core Promoter Elements.

Authors:  Mrutyunjaya Parida; Kyle A Nilson; Ming Li; Christopher B Ball; Harrison A Fuchs; Christine K Lawson; Donal S Luse; Jeffery L Meier; David H Price
Journal:  mBio       Date:  2019-02-12       Impact factor: 7.867

Review 7.  Promoter-proximal pausing of RNA polymerase II: a nexus of gene regulation.

Authors:  Leighton Core; Karen Adelman
Journal:  Genes Dev       Date:  2019-05-23       Impact factor: 11.361

Review 8.  Dynamic Interactions of Transcription Factors and Enhancer Reprogramming in Cancer Progression.

Authors:  Emily Zboril; Hannah Yoo; Lizhen Chen; Zhijie Liu
Journal:  Front Oncol       Date:  2021-09-20       Impact factor: 6.244

9.  Acute stress drives global repression through two independent RNA polymerase II stalling events in Saccharomyces.

Authors:  Nitika Badjatia; Matthew J Rossi; Alain R Bataille; Chitvan Mittal; William K M Lai; B Franklin Pugh
Journal:  Cell Rep       Date:  2021-01-19       Impact factor: 9.423

10.  Genome accessibility dynamics in response to phosphate limitation is controlled by the PHR1 family of transcription factors in Arabidopsis.

Authors:  Alfonso Carlos Barragán-Rosillo; Carlos Alberto Peralta-Alvarez; Jonathan Odilón Ojeda-Rivera; Rodrigo G Arzate-Mejía; Félix Recillas-Targa; Luis Herrera-Estrella
Journal:  Proc Natl Acad Sci U S A       Date:  2021-08-17       Impact factor: 11.205
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