Literature DB >> 29688526

Neutral Theory, Transposable Elements, and Eukaryotic Genome Evolution.

Irina R Arkhipova1.   

Abstract

Among the multitude of papers published yearly in scientific journals, precious few publications may be worth looking back in half a century to appreciate the significance of the discoveries that would later become common knowledge and get a chance to shape a field or several adjacent fields. Here, Kimura's fundamental concept of neutral mutation-random drift, which was published 50 years ago, is re-examined in light of its pervasive influence on comparative genomics and, more specifically, on the contribution of transposable elements to eukaryotic genome evolution.

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Year:  2018        PMID: 29688526      PMCID: PMC6455905          DOI: 10.1093/molbev/msy083

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  27 in total

1.  Multiple Invasions of Visitor, a DD41D Family of Tc1/mariner Transposons, throughout the Evolution of Vertebrates.

Authors:  Dan Shen; Bo Gao; Csaba Miskey; Cai Chen; Yatong Sang; Wencheng Zong; Saisai Wang; Yali Wang; Xiaoyan Wang; Zoltán Ivics; Chengyi Song
Journal:  Genome Biol Evol       Date:  2020-07-01       Impact factor: 3.416

2.  Recent evolution of a TET-controlled and DPPA3/STELLA-driven pathway of passive DNA demethylation in mammals.

Authors:  Christopher B Mulholland; Atsuya Nishiyama; Joel Ryan; Ryohei Nakamura; Merve Yiğit; Ivo M Glück; Carina Trummer; Weihua Qin; Michael D Bartoschek; Franziska R Traube; Edris Parsa; Enes Ugur; Miha Modic; Aishwarya Acharya; Paul Stolz; Christoph Ziegenhain; Michael Wierer; Wolfgang Enard; Thomas Carell; Don C Lamb; Hiroyuki Takeda; Makoto Nakanishi; Sebastian Bultmann; Heinrich Leonhardt
Journal:  Nat Commun       Date:  2020-11-24       Impact factor: 14.919

3.  Evolutionary Dynamics of the Pericentromeric Heterochromatin in Drosophila virilis and Related Species.

Authors:  Alexander P Rezvykh; Sergei Yu Funikov; Lyudmila A Protsenko; Dina A Kulikova; Elena S Zelentsova; Lyubov N Chuvakova; Justin P Blumenstiel; Michael B Evgen'ev
Journal:  Genes (Basel)       Date:  2021-01-27       Impact factor: 4.096

Review 4.  Substitutions Are Boring: Some Arguments about Parallel Mutations and High Mutation Rates.

Authors:  Maximilian Oliver Press; Ashley N Hall; Elizabeth A Morton; Christine Queitsch
Journal:  Trends Genet       Date:  2019-02-20       Impact factor: 11.639

5.  Species-specific chromatin landscape determines how transposable elements shape genome evolution.

Authors:  Yuheng Huang; Harsh Shukla; Yuh Chwen G Lee
Journal:  Elife       Date:  2022-08-23       Impact factor: 8.713

6.  Genome streamlining in a minute herbivore that manipulates its host plant.

Authors:  Robert Greenhalgh; Wannes Dermauw; Joris J Glas; Stephane Rombauts; Nicky Wybouw; Jainy Thomas; Juan M Alba; Ellen J Pritham; Saioa Legarrea; René Feyereisen; Yves Van de Peer; Thomas Van Leeuwen; Richard M Clark; Merijn R Kant
Journal:  Elife       Date:  2020-10-23       Impact factor: 8.140

Review 7.  Regulation of transposable elements by DNA modifications.

Authors:  Özgen Deniz; Jennifer M Frost; Miguel R Branco
Journal:  Nat Rev Genet       Date:  2019-07       Impact factor: 53.242

8.  Repetitive genomic regions and the inference of demographic history.

Authors:  Ajinkya Bharatraj Patil; Nagarjun Vijay
Journal:  Heredity (Edinb)       Date:  2021-05-17       Impact factor: 3.832

Review 9.  Non-Random Genome Editing and Natural Cellular Engineering in Cognition-Based Evolution.

Authors:  William B Miller; Francisco J Enguita; Ana Lúcia Leitão
Journal:  Cells       Date:  2021-05-07       Impact factor: 6.600

10.  Transposon-mediated insertional mutagenesis unmasks recessive insecticide resistance in the aphid Myzus persicae.

Authors:  Michela Panini; Olga Chiesa; Bartlomiej J Troczka; Mark Mallott; Gian Carlo Manicardi; Stefano Cassanelli; Filippo Cominelli; Alex Hayward; Emanuele Mazzoni; Chris Bass
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-08       Impact factor: 11.205

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