Literature DB >> 29684759

Using structurally defined oligosaccharides to understand the interactions between proteins and heparan sulfate.

Ding Xu1, Katelyn Arnold2, Jian Liu3.   

Abstract

Heparan sulfate (HS) is widely present on the animal cell surface and in the extracellular matrix. HS achieves its biological functions by interacting with proteins to change proteins' conformation, oligomerization state and cellular location. The challenging question to study HS is how to dissect the relationship between the structures of HS and the biological activities. In the past several years, crucial techniques have been developed to overcome this challenge. A novel chemoenzymatic method to synthesize structurally defined HS oligosaccharides has offered a key access to this class of sulfated carbohydrate molecules. Recent rapid progress of HS microarray technology allows screening of the interaction of a target protein with a large number of HS oligosaccharides. The improved availability of HS oligosaccharides and HS microarray analysis will undoubtedly accelerate the investigation of the contribution of the specific sulfated carbohydrate structures of HS in a wide range of biological contexts.
Copyright © 2018 Elsevier Ltd. All rights reserved.

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Year:  2018        PMID: 29684759      PMCID: PMC6078804          DOI: 10.1016/j.sbi.2018.04.003

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  43 in total

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Authors:  Zheng-Liang Zhi; Nicolas Laurent; Andrew K Powell; Rositsa Karamanska; Margherita Fais; Josef Voglmeir; Adam Wright; Jonathan M Blackburn; Paul R Crocker; David A Russell; Sabine Flitsch; Rob A Field; Jeremy E Turnbull
Journal:  Chembiochem       Date:  2008-07-02       Impact factor: 3.164

Review 2.  Glycosaminoglycanomics: where we are.

Authors:  Sylvie Ricard-Blum; Frédérique Lisacek
Journal:  Glycoconj J       Date:  2016-11-30       Impact factor: 2.916

Review 3.  Synthetic heparin and heparan sulfate: probes in defining biological functions.

Authors:  Ching-Ting Tsai; Medel Manuel L Zulueta; Shang-Cheng Hung
Journal:  Curr Opin Chem Biol       Date:  2017-10-13       Impact factor: 8.822

4.  Heparan Sulfate Microarray Reveals That Heparan Sulfate-Protein Binding Exhibits Different Ligand Requirements.

Authors:  Chengli Zong; Andre Venot; Xiuru Li; Weigang Lu; Wenyuan Xiao; Jo-Setti L Wilkes; Catherina L Salanga; Tracy M Handel; Lianchun Wang; Margreet A Wolfert; Geert-Jan Boons
Journal:  J Am Chem Soc       Date:  2017-07-07       Impact factor: 15.419

Review 5.  Chemical approaches to define the structure-activity relationship of heparin-like glycosaminoglycans.

Authors:  Christian Noti; Peter H Seeberger
Journal:  Chem Biol       Date:  2005-07

6.  Modular synthesis of heparan sulfate oligosaccharides for structure-activity relationship studies.

Authors:  Sailaja Arungundram; Kanar Al-Mafraji; Jinkeng Asong; Franklin E Leach; I Jonathan Amster; Andre Venot; Jeremy E Turnbull; Geert-Jan Boons
Journal:  J Am Chem Soc       Date:  2009-12-02       Impact factor: 15.419

7.  Expanding the 3-O-Sulfate Proteome--Enhanced Binding of Neuropilin-1 to 3-O-Sulfated Heparan Sulfate Modulates Its Activity.

Authors:  Bryan E Thacker; Emylie Seamen; Roger Lawrence; Matthew W Parker; Yongmei Xu; Jian Liu; Craig W Vander Kooi; Jeffrey D Esko
Journal:  ACS Chem Biol       Date:  2016-01-14       Impact factor: 5.100

8.  Integrated Approach to Identify Heparan Sulfate Ligand Requirements of Robo1.

Authors:  Chengli Zong; Rongrong Huang; Eduard Condac; Yulun Chiu; Wenyuan Xiao; Xiuru Li; Weigang Lu; Mayumi Ishihara; Shuo Wang; Annapoorani Ramiah; Morgan Stickney; Parastoo Azadi; I Jonathan Amster; Kelley W Moremen; Lianchun Wang; Joshua S Sharp; Geert-Jan Boons
Journal:  J Am Chem Soc       Date:  2016-09-27       Impact factor: 15.419

Review 9.  Carbohydrate microarrays: key developments in glycobiology.

Authors:  Yan Liu; Angelina S Palma; Ten Feizi
Journal:  Biol Chem       Date:  2009-07       Impact factor: 3.915

10.  Characterization of heparan sulphate 3-O-sulphotransferase isoform 6 and its role in assisting the entry of herpes simplex virus type 1.

Authors:  Ding Xu; Vaibhav Tiwari; Guoqing Xia; Christian Clement; Deepak Shukla; Jian Liu
Journal:  Biochem J       Date:  2005-01-15       Impact factor: 3.857

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  7 in total

1.  Perspective on computational simulations of glycosaminoglycans.

Authors:  Balaji Nagarajan; Nehru Viji Sankaranarayanan; Umesh R Desai
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2018-09-10

2.  Heparin stimulates biofilm formation of Escherichia coli strain Nissle 1917.

Authors:  Dandan Wu; Xiaomei Li; Yanying Yu; Bingxue Gong; Xianxuan Zhou
Journal:  Biotechnol Lett       Date:  2020-10-04       Impact factor: 2.461

Review 3.  Recent progress in synthesis of carbohydrates with sugar nucleotide-dependent glycosyltransferases.

Authors:  Lan Na; Riyao Li; Xi Chen
Journal:  Curr Opin Chem Biol       Date:  2020-12-10       Impact factor: 8.822

4.  The Use of Myelinating Cultures as a Screen of Glycomolecules for CNS Repair.

Authors:  George A McCanney; Susan L Lindsay; Michael A McGrath; Hugh J Willison; Claire Moss; Charles Bavington; Susan C Barnett
Journal:  Biology (Basel)       Date:  2019-06-28

Review 5.  Structural Insights Into How Proteoglycans Determine Chemokine-CXCR1/CXCR2 Interactions: Progress and Challenges.

Authors:  Krishna Rajarathnam; Umesh R Desai
Journal:  Front Immunol       Date:  2020-04-24       Impact factor: 7.561

Review 6.  From Cancer to COVID-19: A Perspective on Targeting Heparan Sulfate-Protein Interactions.

Authors:  Mohit Chhabra; Gareth G Doherty; Nicholas W See; Neha S Gandhi; Vito Ferro
Journal:  Chem Rec       Date:  2021-06-19       Impact factor: 6.935

Review 7.  Multi-target approaches to CNS repair: olfactory mucosa-derived cells and heparan sulfates.

Authors:  Susan L Lindsay; George A McCanney; Alice G Willison; Susan C Barnett
Journal:  Nat Rev Neurol       Date:  2020-02-25       Impact factor: 42.937

  7 in total

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