Literature DB >> 29681454

Chemistry-First Approach for Nomination of Personalized Treatment in Lung Cancer.

Elizabeth A McMillan1, Myung-Jeom Ryu2, Caroline H Diep1, Saurabh Mendiratta1, Jean R Clemenceau1, Rachel M Vaden1, Ju-Hwa Kim2, Takashi Motoyaji3, Kyle R Covington4, Michael Peyton5, Kenneth Huffman5, Xiaofeng Wu1, Luc Girard5, Yeojin Sung2, Pei-Hsaun Chen6, Prema L Mallipeddi7, Joo Young Lee2, Jordan Hanson7, Sukesh Voruganti7, Yunku Yu8, Sunho Park8, Jessica Sudderth6, Christopher DeSevo1, Donna M Muzny4, HarshaVardhan Doddapaneni4, Adi Gazdar9, Richard A Gibbs4, Tae-Hyun Hwang8, John V Heymach10, Ignacio Wistuba11, Kevin R Coombes12, Noelle S Williams7, David A Wheeler4, John B MacMillan7, Ralph J Deberardinis6, Michael G Roth7, Bruce A Posner7, John D Minna13, Hyun Seok Kim14, Michael A White15.   

Abstract

Diversity in the genetic lesions that cause cancer is extreme. In consequence, a pressing challenge is the development of drugs that target patient-specific disease mechanisms. To address this challenge, we employed a chemistry-first discovery paradigm for de novo identification of druggable targets linked to robust patient selection hypotheses. In particular, a 200,000 compound diversity-oriented chemical library was profiled across a heavily annotated test-bed of >100 cellular models representative of the diverse and characteristic somatic lesions for lung cancer. This approach led to the delineation of 171 chemical-genetic associations, shedding light on the targetability of mechanistic vulnerabilities corresponding to a range of oncogenotypes present in patient populations lacking effective therapy. Chemically addressable addictions to ciliogenesis in TTC21B mutants and GLUT8-dependent serine biosynthesis in KRAS/KEAP1 double mutants are prominent examples. These observations indicate a wealth of actionable opportunities within the complex molecular etiology of cancer.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  KRAS mutant; NRF2 signaling; cancer target identification; chemical biology; ciliogenesis; glucocorticoid therapies; lung cancer; serine biosynthesis

Mesh:

Substances:

Year:  2018        PMID: 29681454      PMCID: PMC5935540          DOI: 10.1016/j.cell.2018.03.028

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  31 in total

1.  Multiple myeloma exhibits novel dependence on GLUT4, GLUT8, and GLUT11: implications for glucose transporter-directed therapy.

Authors:  Samuel K McBrayer; Javelin C Cheng; Seema Singhal; Nancy L Krett; Steven T Rosen; Mala Shanmugam
Journal:  Blood       Date:  2012-03-27       Impact factor: 22.113

2.  Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Authors:  Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

3.  GLUT8 is a glucose transporter responsible for insulin-stimulated glucose uptake in the blastocyst.

Authors:  M O Carayannopoulos; M M Chi; Y Cui; J M Pingsterhaus; R A McKnight; M Mueckler; S U Devaskar; K H Moley
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-20       Impact factor: 11.205

4.  Recurrent Loss of NFE2L2 Exon 2 Is a Mechanism for Nrf2 Pathway Activation in Human Cancers.

Authors:  Leonard D Goldstein; James Lee; Florian Gnad; Christiaan Klijn; Annalisa Schaub; Jens Reeder; Anneleen Daemen; Corey E Bakalarski; Thomas Holcomb; David S Shames; Ryan J Hartmaier; Juliann Chmielecki; Somasekar Seshagiri; Robert Gentleman; David Stokoe
Journal:  Cell Rep       Date:  2016-08-25       Impact factor: 9.423

5.  Global mapping of binding sites for Nrf2 identifies novel targets in cell survival response through ChIP-Seq profiling and network analysis.

Authors:  Deepti Malhotra; Elodie Portales-Casamar; Anju Singh; Siddhartha Srivastava; David Arenillas; Christine Happel; Casper Shyr; Nobunao Wakabayashi; Thomas W Kensler; Wyeth W Wasserman; Shyam Biswal
Journal:  Nucleic Acids Res       Date:  2010-05-11       Impact factor: 16.971

6.  Systematic identification of molecular subtype-selective vulnerabilities in non-small-cell lung cancer.

Authors:  Hyun Seok Kim; Saurabh Mendiratta; Jiyeon Kim; Chad Victor Pecot; Jill E Larsen; Iryna Zubovych; Bo Yeun Seo; Jimi Kim; Banu Eskiocak; Hannah Chung; Elizabeth McMillan; Sherry Wu; Jef De Brabander; Kakajan Komurov; Jason E Toombs; Shuguang Wei; Michael Peyton; Noelle Williams; Adi F Gazdar; Bruce A Posner; Rolf A Brekken; Anil K Sood; Ralph J Deberardinis; Michael G Roth; John D Minna; Michael A White
Journal:  Cell       Date:  2013-10-24       Impact factor: 41.582

7.  TTC21B contributes both causal and modifying alleles across the ciliopathy spectrum.

Authors:  Erica E Davis; Qi Zhang; Qin Liu; Bill H Diplas; Lisa M Davey; Jane Hartley; Corinne Stoetzel; Katarzyna Szymanska; Gokul Ramaswami; Clare V Logan; Donna M Muzny; Alice C Young; David A Wheeler; Pedro Cruz; Margaret Morgan; Lora R Lewis; Praveen Cherukuri; Baishali Maskeri; Nancy F Hansen; James C Mullikin; Robert W Blakesley; Gerard G Bouffard; Gabor Gyapay; Susanne Rieger; Burkhard Tönshoff; Ilse Kern; Neveen A Soliman; Thomas J Neuhaus; Kathryn J Swoboda; Hulya Kayserili; Tomas E Gallagher; Richard A Lewis; Carsten Bergmann; Edgar A Otto; Sophie Saunier; Peter J Scambler; Philip L Beales; Joseph G Gleeson; Eamonn R Maher; Tania Attié-Bitach; Hélène Dollfus; Colin A Johnson; Eric D Green; Richard A Gibbs; Friedhelm Hildebrandt; Eric A Pierce; Nicholas Katsanis
Journal:  Nat Genet       Date:  2011-01-23       Impact factor: 38.330

8.  Mechanism of inhibition of human glucose transporter GLUT1 is conserved between cytochalasin B and phenylalanine amides.

Authors:  Khyati Kapoor; Janet S Finer-Moore; Bjørn P Pedersen; Laura Caboni; Andrew Waight; Roman C Hillig; Peter Bringmann; Iring Heisler; Thomas Müller; Holger Siebeneicher; Robert M Stroud
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-12       Impact factor: 11.205

9.  Identification of novel NRF2-regulated genes by ChIP-Seq: influence on retinoid X receptor alpha.

Authors:  Brian N Chorley; Michelle R Campbell; Xuting Wang; Mehmet Karaca; Deepa Sambandan; Fatu Bangura; Peng Xue; Jingbo Pi; Steven R Kleeberger; Douglas A Bell
Journal:  Nucleic Acids Res       Date:  2012-05-11       Impact factor: 16.971

10.  Gamma-secretase inhibitors reverse glucocorticoid resistance in T cell acute lymphoblastic leukemia.

Authors:  Pedro J Real; Valeria Tosello; Teresa Palomero; Mireia Castillo; Eva Hernando; Elisa de Stanchina; Maria Luisa Sulis; Kelly Barnes; Catherine Sawai; Irene Homminga; Jules Meijerink; Iannis Aifantis; Giuseppe Basso; Carlos Cordon-Cardo; Walden Ai; Adolfo Ferrando
Journal:  Nat Med       Date:  2008-12-21       Impact factor: 53.440

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  36 in total

1.  Identifying therapeutic vulnerabilities in lung cancer: application of a chemistry-first approach.

Authors:  Sharon R Pine; Bríd M Ryan
Journal:  Transl Lung Cancer Res       Date:  2018-09

2.  Metabolic Diversity in Human Non-Small Cell Lung Cancer Cells.

Authors:  Pei-Hsuan Chen; Ling Cai; Kenneth Huffman; Chendong Yang; Jiyeon Kim; Brandon Faubert; Lindsey Boroughs; Bookyung Ko; Jessica Sudderth; Elizabeth A McMillan; Luc Girard; Dong Chen; Michael Peyton; Misty D Shields; Bo Yao; David S Shames; Hyun Seok Kim; Brenda Timmons; Ikuo Sekine; Rebecca Britt; Stephanie Weber; Lauren A Byers; John V Heymach; Jing Chen; Michael A White; John D Minna; Guanghua Xiao; Ralph J DeBerardinis
Journal:  Mol Cell       Date:  2019-09-26       Impact factor: 17.970

Review 3.  Applications of machine learning in drug discovery and development.

Authors:  Jessica Vamathevan; Dominic Clark; Paul Czodrowski; Ian Dunham; Edgardo Ferran; George Lee; Bin Li; Anant Madabhushi; Parantu Shah; Michaela Spitzer; Shanrong Zhao
Journal:  Nat Rev Drug Discov       Date:  2019-06       Impact factor: 84.694

Review 4.  New Approaches to SCLC Therapy: From the Laboratory to the Clinic.

Authors:  John T Poirier; Julie George; Taofeek K Owonikoko; Anton Berns; Elisabeth Brambilla; Lauren A Byers; David Carbone; Huanhuan J Chen; Camilla L Christensen; Caroline Dive; Anna F Farago; Ramaswamy Govindan; Christine Hann; Matthew D Hellmann; Leora Horn; Jane E Johnson; Young S Ju; Sumin Kang; Mark Krasnow; James Lee; Se-Hoon Lee; Jonathan Lehman; Benjamin Lok; Christine Lovly; David MacPherson; David McFadden; John Minna; Matthew Oser; Keunchil Park; Kwon-Sik Park; Yves Pommier; Vito Quaranta; Neal Ready; Julien Sage; Giorgio Scagliotti; Martin L Sos; Kate D Sutherland; William D Travis; Christopher R Vakoc; Sarah J Wait; Ignacio Wistuba; Kwok Kin Wong; Hua Zhang; Jillian Daigneault; Jacinta Wiens; Charles M Rudin; Trudy G Oliver
Journal:  J Thorac Oncol       Date:  2020-02-01       Impact factor: 15.609

5.  Target Discovery of Selective Non-Small-Cell Lung Cancer Toxins Reveals Inhibitors of Mitochondrial Complex I.

Authors:  Nikhil Madhusudhan; Bin Hu; Prashant Mishra; Josè F Calva-Moreno; Khushbu Patel; Richard Boriack; Joseph M Ready; Deepak Nijhawan
Journal:  ACS Chem Biol       Date:  2019-12-24       Impact factor: 5.100

6.  Chemical Biology Toolkit for DCLK1 Reveals Connection to RNA Processing.

Authors:  Yan Liu; Fleur M Ferguson; Lianbo Li; Miljan Kuljanin; Caitlin E Mills; Kartik Subramanian; Wayne Harshbarger; Sudershan Gondi; Jinhua Wang; Peter K Sorger; Joseph D Mancias; Nathanael S Gray; Kenneth D Westover
Journal:  Cell Chem Biol       Date:  2020-08-04       Impact factor: 8.116

7.  FRA1 contributes to MEK-ERK pathway-dependent PD-L1 upregulation by KRAS mutation in premalignant human bronchial epithelial cells.

Authors:  Mi-Heon Lee; Jane Yanagawa; Linh Tran; Tonya C Walser; Bharti Bisht; Eileen Fung; Stacy J Park; Gang Zeng; Kostyantyn Krysan; William D Wallace; Manash K Paul; Luc Girard; Boning Gao; John D Minna; Steven M Dubinett; Jay M Lee
Journal:  Am J Transl Res       Date:  2020-02-15       Impact factor: 4.060

Review 8.  "Keaping" a lid on lung cancer: the Keap1-Nrf2 pathway.

Authors:  Sarah A Best; Kate D Sutherland
Journal:  Cell Cycle       Date:  2018-08-01       Impact factor: 4.534

9.  Discovery of Cytochrome P450 4F11 Activated Inhibitors of Stearoyl Coenzyme A Desaturase.

Authors:  Sarah E Winterton; Emanuela Capota; Xiaoyu Wang; Hong Chen; Prema L Mallipeddi; Noelle S Williams; Bruce A Posner; Deepak Nijhawan; Joseph M Ready
Journal:  J Med Chem       Date:  2018-06-19       Impact factor: 7.446

10.  HORMAD1 Is a Negative Prognostic Indicator in Lung Adenocarcinoma and Specifies Resistance to Oxidative and Genotoxic Stress.

Authors:  Brandt A Nichols; Nathaniel W Oswald; Elizabeth A McMillan; Kathleen McGlynn; Jingsheng Yan; Min S Kim; Janapriya Saha; Prema L Mallipeddi; Sydnie A LaDuke; Pamela A Villalobos; Jaime Rodriguez-Canales; Ignacio I Wistuba; Bruce A Posner; Anthony J Davis; John D Minna; John B MacMillan; Angelique W Whitehurst
Journal:  Cancer Res       Date:  2018-09-05       Impact factor: 12.701

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