Literature DB >> 29679643

Classification and experimental identification of plant long non-coding RNAs.

Muneeza I Rai1, Maheen Alam1, David A Lightfoot2, Priyatansh Gurha3, Ahmed J Afzal4.   

Abstract

Our understanding of gene regulation is constantly evolving. It is now clear that the majority of cellular transcripts are non-coding RNAs. The spectrum of non-coding RNAs is diverse and includes short (<200 nt) and long non-coding RNAs (lncRNAs) (>200 nt). LncRNAs regulate gene expression through diverse mechanisms. In this review, we describe the emerging roles of lncRNA mediated plant gene regulation. We discuss the current classification of lncRNAs and their role in genome organization and gene regulation. We also highlight a subset of lncRNAs that are epigenetic regulators of plant gene expression. Lastly, we provide an overview of emerging techniques and databases that are employed for the identification and characterization of plant lncRNAs.
Copyright © 2018 Elsevier Inc. All rights reserved.

Keywords:  Gene regulation; LncRNA; Non-coding RNA; RNA-seq

Mesh:

Substances:

Year:  2018        PMID: 29679643     DOI: 10.1016/j.ygeno.2018.04.014

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  17 in total

1.  Splicing conservation signals in plant long noncoding RNAs.

Authors:  Jose Antonio Corona-Gomez; Irving Jair Garcia-Lopez; Peter F Stadler; Selene L Fernandez-Valverde
Journal:  RNA       Date:  2020-04-02       Impact factor: 4.942

Review 2.  Plant Noncoding RNAs: Hidden Players in Development and Stress Responses.

Authors:  Yu Yu; Yuchan Zhang; Xuemei Chen; Yueqin Chen
Journal:  Annu Rev Cell Dev Biol       Date:  2019-08-12       Impact factor: 13.827

Review 3.  Crosstalk between abscisic acid and nitric oxide under heat stress: exploring new vantage points.

Authors:  Noushina Iqbal; Shahid Umar; Nafees A Khan; Francisco J Corpas
Journal:  Plant Cell Rep       Date:  2021-04-28       Impact factor: 4.570

4.  Transcriptome-guided annotation and functional classification of long non-coding RNAs in Arabidopsis thaliana.

Authors:  Jose Antonio Corona-Gomez; Evelia Lorena Coss-Navarrete; Irving Jair Garcia-Lopez; Christopher Klapproth; Jaime Alejandro Pérez-Patiño; Selene L Fernandez-Valverde
Journal:  Sci Rep       Date:  2022-08-18       Impact factor: 4.996

Review 5.  Plant Non-Coding RNAs: Origin, Biogenesis, Mode of Action and Their Roles in Abiotic Stress.

Authors:  Joram Kiriga Waititu; Chunyi Zhang; Jun Liu; Huan Wang
Journal:  Int J Mol Sci       Date:  2020-11-09       Impact factor: 5.923

Review 6.  RNA-Based Technologies for Engineering Plant Virus Resistance.

Authors:  Michael Taliansky; Viktoria Samarskaya; Sergey K Zavriev; Igor Fesenko; Natalia O Kalinina; Andrew J Love
Journal:  Plants (Basel)       Date:  2021-01-02

7.  Functional examination of lncRNAs in allotetraploid Gossypium hirsutum.

Authors:  Luyao Wang; Jin Han; Kening Lu; Menglin Li; Mengtao Gao; Zeyi Cao; Ting Zhao; Xue Chen; Xiaoyuan Tao; Quanjia Chen; Xueying Guan
Journal:  BMC Genomics       Date:  2021-06-13       Impact factor: 3.969

Review 8.  Long Non-coding RNA in Plants in the Era of Reference Sequences.

Authors:  Hikmet Budak; Sezgi Biyiklioglu Kaya; Halise Busra Cagirici
Journal:  Front Plant Sci       Date:  2020-03-12       Impact factor: 5.753

Review 9.  Research Tools for the Functional Genomics of Plant miRNAs During Zygotic and Somatic Embryogenesis.

Authors:  Anna Maria Wójcik
Journal:  Int J Mol Sci       Date:  2020-07-14       Impact factor: 5.923

10.  Genome-Wide Screening and Characterization of Non-Coding RNAs in Coffea canephora.

Authors:  Samara M C Lemos; Luiz F C Fonçatti; Romain Guyot; Alexandre R Paschoal; Douglas S Domingues
Journal:  Noncoding RNA       Date:  2020-09-11
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.