Literature DB >> 29675961

A path to the powerhouse: systems-to-structure approaches for studying mitochondrial proteins.

David J Pagliarini1,2.   

Abstract

The young investigator award from the Protein Society was a special honor for me because, at its essence, the goal of my laboratory is to define what obscure proteins do. Years ago, I stumbled into mitochondria as a venue for this work, and these organelles continue to define the biological theme of my laboratory. Our approaches are fairly broad, reflecting my own somewhat unorthodox training among diverse scientific fields spanning organic synthesis, chemical biology, mechanistic biochemistry, signal transduction, and systems biology. Yet, whatever the theme or the discipline, we aim to understand how proteins work-especially those that hide in the dark corners of mitochondria. Below, I recount my own path into this arena of protein science, and describe how my experiences along the way have shaped our current multi-disciplinary efforts to define the inner workings of this complex biological system.
© 2018 The Protein Society.

Keywords:  affinity enrichment mass spectrometry; coenzyme Q; mitochondria; multiomics; structural genomics

Mesh:

Substances:

Year:  2018        PMID: 29675961      PMCID: PMC6153412          DOI: 10.1002/pro.3430

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  30 in total

1.  Isolation of a quinone from beef heart mitochondria.

Authors:  F L CRANE; Y HATEFI; R L LESTER; C WIDMER
Journal:  Biochim Biophys Acta       Date:  1957-07

Review 2.  Mitochondrial modulation: reversible phosphorylation takes center stage?

Authors:  David J Pagliarini; Jack E Dixon
Journal:  Trends Biochem Sci       Date:  2005-12-05       Impact factor: 13.807

3.  Involvement of a mitochondrial phosphatase in the regulation of ATP production and insulin secretion in pancreatic beta cells.

Authors:  David J Pagliarini; Sandra E Wiley; Michelle E Kimple; Jesse R Dixon; Patrick Kelly; Carolyn A Worby; Patrick J Casey; Jack E Dixon
Journal:  Mol Cell       Date:  2005-07-22       Impact factor: 17.970

4.  Novel families of putative protein kinases in bacteria and archaea: evolution of the "eukaryotic" protein kinase superfamily.

Authors:  C J Leonard; L Aravind; E V Koonin
Journal:  Genome Res       Date:  1998-10       Impact factor: 9.043

5.  The BioPlex Network: A Systematic Exploration of the Human Interactome.

Authors:  Edward L Huttlin; Lily Ting; Raphael J Bruckner; Fana Gebreab; Melanie P Gygi; John Szpyt; Stanley Tam; Gabriela Zarraga; Greg Colby; Kurt Baltier; Rui Dong; Virginia Guarani; Laura Pontano Vaites; Alban Ordureau; Ramin Rad; Brian K Erickson; Martin Wühr; Joel Chick; Bo Zhai; Deepak Kolippakkam; Julian Mintseris; Robert A Obar; Tim Harris; Spyros Artavanis-Tsakonas; Mathew E Sowa; Pietro De Camilli; Joao A Paulo; J Wade Harper; Steven P Gygi
Journal:  Cell       Date:  2015-07-16       Impact factor: 41.582

6.  Integrative proteomics and biochemical analyses define Ptc6p as the Saccharomyces cerevisiae pyruvate dehydrogenase phosphatase.

Authors:  Xiao Guo; Natalie M Niemi; Joshua J Coon; David J Pagliarini
Journal:  J Biol Chem       Date:  2017-05-24       Impact factor: 5.157

7.  Multi-omic Mitoprotease Profiling Defines a Role for Oct1p in Coenzyme Q Production.

Authors:  Mike T Veling; Andrew G Reidenbach; Elyse C Freiberger; Nicholas W Kwiecien; Paul D Hutchins; Michael J Drahnak; Adam Jochem; Arne Ulbrich; Matthew J P Rush; Jason D Russell; Joshua J Coon; David J Pagliarini
Journal:  Mol Cell       Date:  2017-12-07       Impact factor: 17.970

8.  Mitochondrial ADCK3 employs an atypical protein kinase-like fold to enable coenzyme Q biosynthesis.

Authors:  Jonathan A Stefely; Andrew G Reidenbach; Arne Ulbrich; Krishnadev Oruganty; Brendan J Floyd; Adam Jochem; Jaclyn M Saunders; Isabel E Johnson; Catherine E Minogue; Russell L Wrobel; Grant E Barber; David Lee; Sheng Li; Natarajan Kannan; Joshua J Coon; Craig A Bingman; David J Pagliarini
Journal:  Mol Cell       Date:  2014-12-11       Impact factor: 17.970

9.  A mitochondrial protein compendium elucidates complex I disease biology.

Authors:  David J Pagliarini; Sarah E Calvo; Betty Chang; Sunil A Sheth; Scott B Vafai; Shao-En Ong; Geoffrey A Walford; Canny Sugiana; Avihu Boneh; William K Chen; David E Hill; Marc Vidal; James G Evans; David R Thorburn; Steven A Carr; Vamsi K Mootha
Journal:  Cell       Date:  2008-07-11       Impact factor: 41.582

10.  Mitochondrial protein functions elucidated by multi-omic mass spectrometry profiling.

Authors:  Jonathan A Stefely; Nicholas W Kwiecien; Elyse C Freiberger; Alicia L Richards; Adam Jochem; Matthew J P Rush; Arne Ulbrich; Kyle P Robinson; Paul D Hutchins; Mike T Veling; Xiao Guo; Zachary A Kemmerer; Kyle J Connors; Edna A Trujillo; Jacob Sokol; Harald Marx; Michael S Westphall; Alexander S Hebert; David J Pagliarini; Joshua J Coon
Journal:  Nat Biotechnol       Date:  2016-09-26       Impact factor: 54.908

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