| Literature DB >> 29674937 |
João M Lanna1, Luís Alexandre E da Silva1, Marli P Morim1, Paula M Leitman1, Natália O Queiroz1, Fabiana L R Filardi1, Eduardo C Dalcin1, Felipe A Oliveira1, Rafaela C Forzza1.
Abstract
BACKGROUND: This paper provides a quantitative and general description of the Rio de Janeiro Botanical Garden herbarium (RB) dataset. Created over a century ago, the RB currently comprises ca. 750,000 mounted specimens, with a strong representation of Brazilian flora, mainly from the Atlantic and Amazon forests. Nearly 100% of these specimens have been entered into the database and imaged and, at present, about 17% have been geo-referenced. This data paper is focused exclusively on RB's exsiccatae collection of land plants and algae, which is currently increasing by about twenty to thirty thousand specimens per year thanks to fieldwork, exchange and donations. Since 2005, many national and international projects have been implemented, improving the quality and accessibility of the collection. The most important facilitating factor in this process was the creation of the institutional system for plants collection and management, named JABOT. Since the RB is continuously growing, the dataset is updated weekly on SiBBr and GBIF portals. NEW INFORMATION: The most represented environments are the Atlantic and Amazon forests, a biodiversity hotspot and the world's largest rain forest, respectively. The dataset described in this article contains the data and metadata of plants and algae specimens in the RB collection and the link to access the respective images. Currently, the RB data is publicly available online at several biodiversity portals, such as our institutional database JABOT, the Reflora Virtual Herbarium, the SiBBr and the GBIF portal. However, a description of the RB dataset as a whole is not available in the literature.Entities:
Keywords: Amazon forest; Atlantic forest; Southern Brazil; neotropical flora; taxonomy
Year: 2018 PMID: 29674937 PMCID: PMC5904554 DOI: 10.3897/BDJ.6.e22757
Source DB: PubMed Journal: Biodivers Data J ISSN: 1314-2828
Figure 1.Number of specimens per botanical family (≥ 4.000 specimens) deposited in the RB herbarium.
Figure 2.Georeferenced specimen deposited in the RB herbarium (ca. 17% of the total).
Figure 3.Number of specimens deposited in the RB herbarium by year of collection.
Figure 4.Number of specimens databased in JABOT system per year.
Figure 5.Number of vouchers per Brazilian states deposited in the RB herbarium.
| Column label | Column description |
|---|---|
| occurrenceID | The unique identifier of the Occurrence. |
| identifiedBy | A list (concatenated and separated) of names of people, groups or organisations who assigned the Taxon to the subject. |
| dateIdentified | The date on which the subject was identified as representing the Taxon. |
| identificationRemarks | Comments or notes about the identification. |
| identificationQualifier | A standard term ("cf.", "aff.") to express the determiner's doubts about the identification. |
| typeStatus | Status of the type. Controlled vocabulary of terms (HOLOTIPO, LECTOTIPO, ISOTIPO, SINTIPO, PARATIPO, NEOTIPO, EPITIPO, TYPUS). The category "TYPUS" is used for undefined type status. |
| scientificName | The full scientific name, with authorship. |
| family | The full scientific name of the family in which the taxon is classified. |
| genus | The full scientific name of the genus in which the taxon is classified. |
| SpecificEpithet | The name of the first or species epithet of the scientificName. |
| infraspecificEpithet | The name of the lowest or terminal infraspecific epithet of the scientificName. |
| taxonRank | The taxonomic rank of the most specific name in the scientificName. |
| scientificNameAuthorship | The authorship information for the scientificName. |
| format | Image file format. |
| identifier | A list, concatenated and separated by "|" of the specimens images URLs in a low-resolution format to be used as thumbnails. |
| references | A list, concatenated and separated by "|" of the specimens images URLs in a high-resolution format to be integrated into other portals and websites. |
| license | A legal document giving official permission to do something with the resource. |
| rightsHolder | A person or organisation owning or managing rights over the resource. |
| type | The nature or genre of the resource. |
| modified | The most recent date-time on which the resource was changed. |
| institutionCode | The name (or acronym) in use by the institution having custody of the object(s) or information referred to in the record. |
| collectionCode | The name, acronym, coden or initialism identifying the collection or data set from which the record was derived. |
| basisOfRecord | The specific nature of the data record. |
| catalogNumber | Barcode of the specimen. |
| recordNumber | The collector's number. |
| recordedBy | A list (concatenated and separated) of names of people, groups or organisations responsible for recording the original occurrence. |
| otherCatalogNumbers | Sequential register number historically adopted by the RB herbarium. |
| associatedMedia | A list, concatenated and separated by "|" of the specimens images URLs in a low-resolution format to be used as thumbnails. The content and sequence of this column is the same of the "License" column on the Multimedia extension and can be used as identifiers for the independent images. |
| eventDate | Date of collection. |
| year | Year of collection. |
| month | Month of collection. |
| day | Day of collection. |
| fieldNumber | An identifier given to the event in the field. Can be described as the number of the field campaign. |
| fieldNotes | The text of notes taken in the field about the specimen. |
| eventRemarks | Comments or notes about the field campaign. |
| country | The name of the country or major administrative unit in which the Location occurs. |
| countryCode | The standard code for the country in which the Location occurs according to ISO 3166-1-alpha-2 country codes. |
| stateProvince | The name of the next smaller administrative region than country (state, province, canton, department, region etc.) in which the Location occurs. |
| county | The full, unabbreviated name of the next smaller administrative region than stateProvince (county, shire, department etc.) in which the Location occurs. |
| locality | The specific description of the place. Less specific geographic information can be provided in other geographic terms (higherGeography, continent, country, stateProvince, county, municipality, waterBody, island, islandGroup). This term may contain information modified from the original to correct perceived errors or to standardise the description. |
| minimumElevationInMeters | The lower limit of the range of elevation (altitude, usually above sea level), in metres. |
| maximumElevationInMeters | The upper limit of the range of elevation (altitude, usually above sea level), in metres. |
| verbatimLatitude | The verbatim original latitude of the Location. |
| verbatimLongitude | The verbatim original longitude of the Location. |
| decimalLatitude | The geographic latitude (in decimal degrees, using the spatial reference system given in geodeticDatum) of the geographic centre of a Location. Positive values are north of the Equator, negative values are south of it. Legal values lie between -90 and 90, inclusive. |
| decimalLongitude | The geographic longitude (in decimal degrees, using the spatial reference system given in geodeticDatum) of the geographic centre of a Location. Positive values are east of the Greenwich Meridian, negative values are west of it. Legal values lie between -180 and 180, inclusive. |