Literature DB >> 29673772

Widespread Enhancer Activity from Core Promoters.

Alejandra Medina-Rivera1, David Santiago-Algarra2, Denis Puthier2, Salvatore Spicuglia3.   

Abstract

Gene expression in higher eukaryotes is precisely regulated in time and space through the interplay between promoters and gene-distal regulatory regions, known as enhancers. The original definition of enhancers implies the ability to activate gene expression remotely, while promoters entail the capability to locally induce gene expression. Despite the conventional distinction between them, promoters and enhancers share many genomic and epigenomic features. One intriguing finding in the gene regulation field comes from the observation that many core promoter regions display enhancer activity. Recent high-throughput reporter assays along with clustered regularly interspaced short palindromic repeats (CRISPR)/Cas9-related approaches have indicated that this phenomenon is common and might have a strong impact on our global understanding of genome organisation and gene expression regulation.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Keywords:  CRISPR/Cas9; ePromoters; enhancer; gene regulation; promoters; reporter assays

Mesh:

Year:  2018        PMID: 29673772     DOI: 10.1016/j.tibs.2018.03.004

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  22 in total

Review 1.  Phase Separation and Transcription Regulation: Are Super-Enhancers and Locus Control Regions Primary Sites of Transcription Complex Assembly?

Authors:  Aishwarya Gurumurthy; Yong Shen; Eliot M Gunn; Jörg Bungert
Journal:  Bioessays       Date:  2018-11-30       Impact factor: 4.345

2.  Lessons from eRNAs: understanding transcriptional regulation through the lens of nascent RNAs.

Authors:  Joseph F Cardiello; Gilson J Sanchez; Mary A Allen; Robin D Dowell
Journal:  Transcription       Date:  2019-12-19

3.  Hypoxia induces cancer cell-specific chromatin interactions and increases MALAT1 expression in breast cancer cells.

Authors:  Joshua K Stone; Jung-Hyun Kim; Lana Vukadin; Alexander Richard; Hannah K Giannini; Ssang-Taek Steve Lim; Ming Tan; Eun-Young Erin Ahn
Journal:  J Biol Chem       Date:  2019-06-05       Impact factor: 5.157

4.  Molecular Studies on Pregnancy with Mouse Models.

Authors:  San-Pin Wu; Olivia M Emery; Francesco J DeMayo
Journal:  Curr Opin Physiol       Date:  2019-11-04

5.  ITGA4 gene methylation status in chronic lymphocytic leukemia.

Authors:  Hanaa Rm Attia; Mona Hamed Ibrahim; Shereen H Abd El-Aziz; Naglaa M Hassan; Randa A Osman; Heba A Hagag; Marianne E Yassa; Amany H Abdelrahman; Iman I Salama; Mohamed Emam Sobeih
Journal:  Future Sci OA       Date:  2020-06-26

Review 6.  Molecular Basis of the Function of Transcriptional Enhancers.

Authors:  Airat N Ibragimov; Oleg V Bylino; Yulii V Shidlovskii
Journal:  Cells       Date:  2020-07-05       Impact factor: 6.600

7.  The hyper-activation of transcriptional enhancers in breast cancer.

Authors:  Qing-Lan Li; Dan-Ya Wang; Lin-Gao Ju; Jie Yao; Chuan Gao; Pin-Ji Lei; Lian-Yun Li; Xiao-Lu Zhao; Min Wu
Journal:  Clin Epigenetics       Date:  2019-03-12       Impact factor: 6.551

8.  High-throughput functional analysis of lncRNA core promoters elucidates rules governing tissue specificity.

Authors:  Marta Melé; John L Rinn; Kaia Mattioli; Pieter-Jan Volders; Chiara Gerhardinger; James C Lee; Philipp G Maass
Journal:  Genome Res       Date:  2019-01-25       Impact factor: 9.043

Review 9.  Dysregulated Transcriptional Control in Prostate Cancer.

Authors:  Simon J Baumgart; Ekaterina Nevedomskaya; Bernard Haendler
Journal:  Int J Mol Sci       Date:  2019-06-13       Impact factor: 5.923

Review 10.  The role of noncoding mutations in blood cancers.

Authors:  Sunniyat Rahman; Marc R Mansour
Journal:  Dis Model Mech       Date:  2019-11-26       Impact factor: 5.758

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