| Literature DB >> 29670389 |
Mitsuru Yashiro1, Masaki Ohya1, Toru Mima1, Yumi Ueda2, Yuri Nakashima1, Kazuki Kawakami1, Yohei Ishizawa2, Shuto Yamamoto1, Sou Kobayashi1, Takurou Yano1, Yusuke Tanaka1, Kouji Okuda1, Tomohiro Sonou1, Tomohiro Shoshihara1, Yuko Iwashita1, Yu Iwashita1, Kouichi Tatsuta1, Ryo Matoba2, Shigeo Negi1, Takashi Shigematsu1.
Abstract
BACKGROUND: FGF23 plays an important role in calcium-phosphorus metabolism. Other roles of FGF23 have recently been reported, such as commitment to myocardium enlargement and immunological roles in the spleen. In this study, we aimed to identify the roles of FGF23 in the kidneys other than calcium-phosphorus metabolism.Entities:
Keywords: DNA microarray; FGF23; PPARγ; STAT1; bioinformatics analysis; nonprotein-coding gene
Year: 2018 PMID: 29670389 PMCID: PMC5894721 DOI: 10.2147/IJNRD.S158422
Source DB: PubMed Journal: Int J Nephrol Renovasc Dis ISSN: 1178-7058
Differentially expressed protein-coding genes following FGF23 stimulation
| Gene symbol | Gene title | Accession no. | Fold change |
|---|---|---|---|
| ref|Mus musculus regulator of G-protein signaling 16 | NM_011267 | 1.514 | |
| ref|Mus musculus keratin 17 | NM_010663 | 1.509 | |
| ref|Mus musculus AKT1 substrate 1 (proline-rich), transcript variant 3 | NM_001290694 | 1.529 | |
| ref|Mus musculus BCL2/adenovirus E1B-interacting protein 3 | NM_009760 | 0.460 | |
| ref|Mus musculus adenylate kinase 4, transcript variant 1 | NM_001177602 | 0.666 | |
| ref|Mus musculus metallothionein 1 | NM_013602 | 0.565 | |
| ref|Mus musculus metallothionein 2 | NM_008630 | 0.575 | |
| ref|Mus musculus pyruvate dehydrogenase kinase, isoenzyme 1 | NM_172665 | 0.619 | |
| ref|Mus musculus solute carrier family 16 (monocarboxylic acid transporters), member 3 | NM_030696 | 0.654 | |
| ref|Mus musculus Ca2+-dependent activator protein for secretion 2, transcript variant 1 | NM_153163 | 0.602 | |
| ref|Mus musculus transmembrane serine protease 6 | NM_027902 | 0.649 | |
| ref|Mus musculus selenium-binding protein 1 | NM_009150 | 0.621 | |
| ref|Mus musculus ankyrin repeat domain 37 | NM_001039562 | 0.624 | |
| ref|Mus musculus RIKEN cDNA 2010300C02 gene | NM_028096 | 0.669 | |
| gb|Mus musculus adult male urinary bladder cDNA, RIKEN full-length enriched library, clone: 9530097N15 product: unclassifiable, full insert sequence | AK020664 | 0.619 | |
| ref|Mus musculus RIKEN cDNA 1700026L06 gene | NM_027283 | 0.648 | |
Differentially expressed noncoding genes following FGF23 stimulation
| Gene symbol | Gene title | Affymetrix probe ID | Fold change |
|---|---|---|---|
| chr11:58136882-58143829_R | lincRNA:chr11:58136882-58143829 reverse strand | 10094 | 1.647 |
| chr11:58136882-58143829_R | lincRNA:chr11:58136882-58143829 reverse strand | 17372 | 1.950 |
| chr1:59775022-59780348_F | lincRNA:chr1:59775022-59780348 forward strand | 51425 | 1.561 |
| chr9:95295459-95301266_F | lincRNA:chr9:95295459-95301266 forward strand | 56437 | 1.514 |
| chr11:58136882-58143829_R | lincRNA:chr11:58136882-58143829 reverse strand | 61180 | 2.038 |
| chr4:56013597-56020622_R | lincRNA:chr4:56013597-56020622 reverse strand | 44012 | 0.661 |
| A_55_P2097048 | Unknown | 54292 | 0.468 |
| chr6:112552041-112560067_R | lincRNA:chr6:112552041-112560067 reverse strand | 59856 | 0.572 |
Transcription factors putatively involved in the upregulation of genes following FGF23 stimulation
| Transcription factor | JASPAR ID | No. of target gene hits | Hit genes | Biological function |
|---|---|---|---|---|
| Zfp423 | MA0116.1 | 2 | Zinc-finger | |
| RORA_1 | MA0071.1 | 2 | Immunity | |
| PPARG::RXRA | MA0065.2 | 2 | Vitamin D | |
| Spz1 | MA0111.1 | 2 | Sex determination | |
| INSM1 | MA0155.1 | 2 | Zinc-finger | |
| CREB1 | MA0018.2 | 2 | Neurons | |
| Stat3 | MA0144.1 | 2 | Erythropoietin | |
| REL | MA0101.1 | 2 | NF-κb signaling | |
| EBF1 | MA0154.1 | 2 | Immunity | |
| SP1 | MA0079.2 | 2 | Zinc-finger | |
| YY1 | MA0095.1 | 2 | Immunity | |
| MZF1_5-13 | MA0057.1 | 2 | Zinc-finger | |
| ELK1 | MA0028.1 | 2 | ERK signaling | |
| Klf4 | MA0039.2 | 2 | Cancer | |
| NFATC2 | MA0152.1 | 2 | Immunity | |
| Arnt::Ahr | MA0006.1 | 2 | Inflammation |
Transcription factors putatively involved in the downregulation of genes following FGF23 stimulation
| Transcription factor | JASPAR ID | No. of target gene hits | Hit genes | Biological function |
|---|---|---|---|---|
| HOXA5 | MA0158.1 | 12 | Fat metabolism | |
| Pdx1 | MA0132.1 | 10 | Organogenesis | |
| ZEB1 | MA0093.1 | 10 | Organogenesis | |
| HIF1A ARNT | MA0259.1 | 9 | Oxidative stress | |
| NFATC2 | MA0152.1 | 9 | Immunity | |
| Nkx2-5 | MA0063.1 | 9 | Organogenesis | |
| SPIB | MA0081.1 | 9 | Organogenesis | |
| USF1 | MA0093.1 | 8 | Fat metabolism | |
| Arnt | MA0004.1 | 8 | Oxidative stress | |
| FOXO3 | MA0157.1 | 7 | Organogenesis | |
| Prrx2 | MA0075.1 | 7 | Organogenesis | |
| SRY | MA0084.1 | 7 | Sex determination | |
| Sox5 | MA0087.1 | 7 | Organogenesis | |
| FOXD1 | MA0031.1 | 6 | Oxidative stress | |
| Spz1 | MA0111.1 | 6 | Sex determination | |
| Nobox | MA0125.1 | 6 | Organogenesis | |
| NFIL3 | MA0025.1 | 4 | Immunity | |
| NFE2L2 | MA0150.1 | 4 | Oxidative stress | |
| Ddit3 Cebpa | MA0019.1 | 4 | Leukemia | |
| HNF4A | MA0114.1 | 4 | Organogenesis | |
| Egr1 | MA0162.1 | 4 | ERK signaling | |
| HNF1A | MA0046.1 | 3 | Oxidative stress | |
| STAT1 | MA0137.2 | 3 | Erythropoietin |
Figure 1Interactive effects of FGF23 and erythropoietin on the expression of genes upregulated by FGF23.
Notes: mIMCD3 cells were stimulated with erythropoietin with or without FGF23 for 2 or 4 h. Gene expression was measured by quantitative polymerase chain reactions. White bars: no stimulation; black bars: stimulation with 1 U/mL erythropoietin; vertically striped bars: stimulation with 10 ng/mL FGF23; horizontally striped bars: stimulation with 1 U/mL erythropoietin plus 10 ng/mL FGF23. n = 7–10. *p < 0.05.
Abbreviation: ns, not significant.
Figure 2Interactive effects of FGF23 and erythropoietin on the expression of genes downregulated by FGF23.
Notes: mIMCD3 cells were stimulated with erythropoietin with or without FGF23 for 2 or 4 h. Gene expression was measured by quantitative polymerase chain reactions. White bars: no stimulation; black bars: stimulation with 1 U/mL erythropoietin; vertically striped bars: stimulation with 10 ng/mL FGF23; horizontally striped bars: stimulation with 1 U/mL erythropoietin plus 10 ng/mL FGF23. n = 7–10. *p < 0.05.
Abbreviation: ns, not significant.
Figure 3Effect of FGF23 on the phosphorylation of STAT1 induced by erythropoietin.
Notes: mIMCD3 cells were stimulated with the following: 5 U/mL erythropoietin alone; 10 ng/mL FGF23 alone or 5 U/mL erythropoietin plus 10, 20 or 50 ng/mL FGF23. Phosphorylated STAT1 was detected by Western blotting.
Abbreviations: PC, positive control for phosphorylated STAT1 (control cell extract); none, unstimulated cells; Epo, erythropoietin; p-STAT1, phosphorylated STAT1; GAPDH, control for total protein loading.
Figure 4Effects of ERK inhibition on the regulation of gene expression by FGF23 and erythropoietin.
Notes: mIMCD3 cells were treated with erythropoietin alone, with erythropoietin plus FGF23 or with erythropoietin and FGF23 plus the ERK inhibitor, FR180204, for 2 h. Gene expression was measured by quantitative polymerase chain reactions. White bars: no treatment; black bars: 1 U/mL erythropoietin alone (E); vertically striped bars: 1 U/mL erythropoietin plus 10 ng/mL FGF23 (EF); horizontally striped bars: 1 U/mL erythropoietin and 10 ng/mL FGF23 plus 1 µM FR180204 (FR + EF). n = 6. *p < 0.05.
Figure 5Expression of EpoR and Klotho protein by mouse bone marrow cells.
Notes: To confirm that mouse bone marrow cells expressed EpoR and Klotho, these cells were assayed by flow cytometry. Aliquots of 106 bone marrow cells were incubated with anti-EpoR–FITC and anti-Klotho–PE antibodies, and the cells were analyzed on an FACS Aria flow cytometer (BD Biosciences, San Jose, CA, USA). (A) Erythroblast gating (P1) of bone marrow cells (FSC-A, SSC-A). (B) P1 gated, isotype controls. (C) P1 gated, EpoR- and Klotho-labeled. Bone marrow cells were obtained from the femurs and tibias of male C57BL/6J mice. PE was conjugated to an anti-human Klotho monoclonal antibody (cat. no. KO603) using a Phycoerythrin Labeling Kit-NH2 (Dojindo Molecular Technologies, Kumamoto, Japan). FITC was conjugated to an anti-mouse EpoR monoclonal antibody (cat. no. ab56310) using a Fluorescein Labeling Kit-NH2 (Dojindo Molecular Technologies).
Abbreviations: FITC, fluorescein isothiocyanate; PE, phycoerythrin; FSC-A, forward scatter; SSC-A, side scatter.