Literature DB >> 29658407

C-mix: A high-dimensional mixture model for censored durations, with applications to genetic data.

Simon Bussy1,2, Agathe Guilloux3, Stéphane Gaïffas4,5, Anne-Sophie Jannot6,7.   

Abstract

We introduce a supervised learning mixture model for censored durations (C-mix) to simultaneously detect subgroups of patients with different prognosis and order them based on their risk. Our method is applicable in a high-dimensional setting, i.e. with a large number of biomedical covariates. Indeed, we penalize the negative log-likelihood by the Elastic-Net, which leads to a sparse parameterization of the model and automatically pinpoints the relevant covariates for the survival prediction. Inference is achieved using an efficient Quasi-Newton Expectation Maximization algorithm, for which we provide convergence properties. The statistical performance of the method is examined on an extensive Monte Carlo simulation study and finally illustrated on three publicly available genetic cancer datasets with high-dimensional covariates. We show that our approach outperforms the state-of-the-art survival models in this context, namely both the CURE and Cox proportional hazards models penalized by the Elastic-Net, in terms of C-index, AUC( t) and survival prediction. Thus, we propose a powerful tool for personalized medicine in cancerology.

Entities:  

Keywords:  CURE model; Coxs proportional hazards model; Elastic-Net regularization; high-dimensional estimation; mixture duration model; survival analysis

Year:  2018        PMID: 29658407     DOI: 10.1177/0962280218766389

Source DB:  PubMed          Journal:  Stat Methods Med Res        ISSN: 0962-2802            Impact factor:   3.021


  4 in total

1.  Regression modelling of interval censored data based on the adaptive ridge procedure.

Authors:  Olivier Bouaziz; Eva Lauridsen; Grégory Nuel
Journal:  J Appl Stat       Date:  2021-06-23       Impact factor: 1.416

2.  Inferring latent heterogeneity using many feature variables supervised by survival outcome.

Authors:  Beilin Jia; Donglin Zeng; Jason J Z Liao; Guanghan F Liu; Xianming Tan; Guoqing Diao; Joseph G Ibrahim
Journal:  Stat Med       Date:  2021-04-05       Impact factor: 2.497

3.  Comparison of methods for early-readmission prediction in a high-dimensional heterogeneous covariates and time-to-event outcome framework.

Authors:  Simon Bussy; Raphaël Veil; Vincent Looten; Anita Burgun; Stéphane Gaïffas; Agathe Guilloux; Brigitte Ranque; Anne-Sophie Jannot
Journal:  BMC Med Res Methodol       Date:  2019-03-06       Impact factor: 4.615

4.  Controlled variable selection in Weibull mixture cure models for high-dimensional data.

Authors:  Han Fu; Deedra Nicolet; Krzysztof Mrózek; Richard M Stone; Ann-Kathrin Eisfeld; John C Byrd; Kellie J Archer
Journal:  Stat Med       Date:  2022-07-06       Impact factor: 2.497

  4 in total

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