Literature DB >> 29655612

Practical application of ligand efficiency metrics in lead optimisation.

James S Scott1, Michael J Waring2.   

Abstract

The use of composite metrics that normalise biological potency values in relation to markers of physicochemical properties, such as size or lipophilicity, has gained a significant amount of traction with many medicinal chemists in recent years. However, there is no consensus on best practice in the area and their application has attracted some criticism. Here we present our approach to their application in lead optimisation projects, provide an objective discussion of the principles we consider important and illustrate how our use of lipophilic ligand efficiency enabled the progression of a number of our successful drug discovery projects. We derive, from this and some recent literature highlights, a set of heuristic guidelines for lipophilicity based optimisation that we believe are generally applicable across chemical series and protein targets.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Keywords:  Lead optimisation; Ligand efficiency; Lipophilic ligand efficiency; Lipophilicity

Mesh:

Substances:

Year:  2018        PMID: 29655612     DOI: 10.1016/j.bmc.2018.04.004

Source DB:  PubMed          Journal:  Bioorg Med Chem        ISSN: 0968-0896            Impact factor:   3.641


  7 in total

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Journal:  ACS Infect Dis       Date:  2019-08-14       Impact factor: 5.084

Review 2.  Rethinking drug design in the artificial intelligence era.

Authors:  Petra Schneider; W Patrick Walters; Alleyn T Plowright; Norman Sieroka; Jennifer Listgarten; Robert A Goodnow; Jasmin Fisher; Johanna M Jansen; José S Duca; Thomas S Rush; Matthias Zentgraf; John Edward Hill; Elizabeth Krutoholow; Matthias Kohler; Jeff Blaney; Kimito Funatsu; Chris Luebkemann; Gisbert Schneider
Journal:  Nat Rev Drug Discov       Date:  2019-12-04       Impact factor: 84.694

3.  Location and Cell-Type-Specific Bias of Metabotropic Glutamate Receptor, mGlu5, Negative Allosteric Modulators.

Authors:  Yuh-Jiin Ivy Jong; Steven K Harmon; Karen L O'Malley
Journal:  ACS Chem Neurosci       Date:  2019-10-28       Impact factor: 4.418

4.  Relating Conformational Equilibria to Conformer-Specific Lipophilicities: New Opportunities in Drug Discovery.

Authors:  Bruno Linclau; Zhong Wang; Benjamin Jeffries; Jérôme Graton; Rodrigo J Carbajo; Davy Sinnaeve; Jean-Yves Le Questel; James S Scott; Elisabetta Chiarparin
Journal:  Angew Chem Int Ed Engl       Date:  2021-12-29       Impact factor: 16.823

5.  Efficient Oxidative Dearomatisations of Substituted Phenols Using Hypervalent Iodine (III) Reagents and Antiprotozoal Evaluation of the Resulting Cyclohexadienones against T. b. rhodesiense and P. falciparum Strain NF54.

Authors:  Nina Scheiber; Gregor Blaser; Eva-Maria Pferschy-Wenzig; Marcel Kaiser; Pascal Mäser; Armin Presser
Journal:  Molecules       Date:  2022-10-04       Impact factor: 4.927

Review 6.  PROTAC targeted protein degraders: the past is prologue.

Authors:  Miklós Békés; David R Langley; Craig M Crews
Journal:  Nat Rev Drug Discov       Date:  2022-01-18       Impact factor: 112.288

7.  In Silico Structure-Based Approach for Group Efficiency Estimation in Fragment-Based Drug Design Using Evaluation of Fragment Contributions.

Authors:  Dmitry A Shulga; Nikita N Ivanov; Vladimir A Palyulin
Journal:  Molecules       Date:  2022-03-18       Impact factor: 4.411

  7 in total

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