Literature DB >> 29653762

Concerns regarding 'off-target' activity of genome editing endonucleases.

Ulhas Sopanrao Kadam1, Rahul Mahadev Shelake2, Rahul L Chavhan3, Penna Suprasanna4.   

Abstract

Genome editing (GE) tools ensure targeted mutagenesis and sequence-specific modification in plants using a wide resource of customized endonucleases; namely, zinc-finger nucleases (ZFNs), and transcription activator-like effector nucleases (TALENs), and the CRISPR (clustered regularly interspaced short palindromic repeats)/Cas (CRISPR-associated protein) system. Among these, in recent times CRISPR/Cas9 has been widely used in functional genomics and plant genetic modification. A significant concern in the application of GE tools is the occurrence of 'off-target' activity and induced mutations, which may impede functional analysis and gene activity studies. Moreover, the 'off-target' activity results in either not reported or unknown, difficult to detect, produce non-quantifiable cellular signaling and physiological effects. In the past few years, several experimental methods have been developed to identify undesired mutations and to curtail 'off-target' cleavage. Improvement in target specificity and minimizing 'off-target' activity will offer better applications of GE technology in plant biology and crop improvement.
Copyright © 2018 Elsevier Masson SAS. All rights reserved.

Keywords:  Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR); Endonucleases; Engineered or synthetic nucleases; Genome editing; Transcription Activator Effector-Like Nucleases (TALENs); Zinc Finger Nucleases (ZFNs)

Mesh:

Substances:

Year:  2018        PMID: 29653762     DOI: 10.1016/j.plaphy.2018.03.027

Source DB:  PubMed          Journal:  Plant Physiol Biochem        ISSN: 0981-9428            Impact factor:   4.270


  11 in total

Review 1.  Genome centric engineering using ZFNs, TALENs and CRISPR-Cas9 systems for trait improvement and disease control in Animals.

Authors:  Atif Khurshid Wani; Nahid Akhtar; Reena Singh; Ajit Prakash; Sayed Haidar Abbas Raza; Simona Cavalu; Chirag Chopra; Mahmoud Madkour; Ahmed Elolimy; Nesrein M Hashem
Journal:  Vet Res Commun       Date:  2022-07-04       Impact factor: 2.459

2.  CRISPR/Cas12a Coupled With Recombinase Polymerase Amplification for Sensitive and Specific Detection of Aphelenchoides besseyi.

Authors:  Anpeng Zhang; Bin Sun; Jianming Zhang; Can Cheng; Jihua Zhou; Fuan Niu; Zhongyong Luo; Luzhen Yu; Cui Yu; Yuting Dai; Kaizhen Xie; Qiyan Hu; Yue Qiu; Liming Cao; Huangwei Chu
Journal:  Front Bioeng Biotechnol       Date:  2022-06-30

Review 3.  Occurrence and Nature of Off-Target Modifications by CRISPR-Cas Genome Editing in Plants.

Authors:  Mark H J Sturme; Jan Pieter van der Berg; Lianne M S Bouwman; Adinda De Schrijver; Ruud A de Maagd; Gijs A Kleter; Evy Battaglia-de Wilde
Journal:  ACS Agric Sci Technol       Date:  2022-03-03

4.  Beyond Risk Considerations: Where and How Can a Debate About Non-safety Related Issues of Genome Editing in Agriculture Take Place?

Authors:  Sarah Bechtold
Journal:  Front Plant Sci       Date:  2018-11-26       Impact factor: 5.753

5.  No Pain, No Gain? In Defence of Genetically Disenhancing (Most) Research Animals.

Authors:  Katrien Devolder; Matthias Eggel
Journal:  Animals (Basel)       Date:  2019-04-09       Impact factor: 2.752

Review 6.  Exploration of Plant-Microbe Interactions for Sustainable Agriculture in CRISPR Era.

Authors:  Rahul Mahadev Shelake; Dibyajyoti Pramanik; Jae-Yean Kim
Journal:  Microorganisms       Date:  2019-08-17

7.  CRISPR/Cas9-Mediated Generation of Pathogen-Resistant Tomato against Tomato Yellow Leaf Curl Virus and Powdery Mildew.

Authors:  Dibyajyoti Pramanik; Rahul Mahadev Shelake; Jiyeon Park; Mi Jung Kim; Indeok Hwang; Younghoon Park; Jae-Yean Kim
Journal:  Int J Mol Sci       Date:  2021-02-13       Impact factor: 5.923

Review 8.  Engineering Resistance Against Viruses in Field Crops Using CRISPR- Cas9.

Authors:  Vidya R Hinge; Rahul L Chavhan; Sandeep P Kale; Penna Suprasanna; Ulhas S Kadam
Journal:  Curr Genomics       Date:  2021-10-18       Impact factor: 2.236

9.  Conserved Opposite Functions in Plant Resistance to Biotrophic and Necrotrophic Pathogens of the Immune Regulator SRFR1.

Authors:  Geon Hui Son; Jiyun Moon; Rahul Mahadev Shelake; Uyen Thi Vuong; Robert A Ingle; Walter Gassmann; Jae-Yean Kim; Sang Hee Kim
Journal:  Int J Mol Sci       Date:  2021-06-15       Impact factor: 5.923

10.  Manifold roles of β-arrestins in GPCR signaling elucidated with siRNA and CRISPR/Cas9.

Authors:  Louis M Luttrell; Jialu Wang; Bianca Plouffe; Jeffrey S Smith; Lama Yamani; Suneet Kaur; Pierre-Yves Jean-Charles; Christophe Gauthier; Mi-Hye Lee; Biswaranjan Pani; Jihee Kim; Seungkirl Ahn; Sudarshan Rajagopal; Eric Reiter; Michel Bouvier; Sudha K Shenoy; Stéphane A Laporte; Howard A Rockman; Robert J Lefkowitz
Journal:  Sci Signal       Date:  2018-09-25       Impact factor: 9.517

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