Anabik Pal1, Utpal Garain2, Aditi Chandra3, Raghunath Chatterjee4, Swapan Senapati5. 1. CVPR Unit, Indian Statistical Institute, Kolkata 700108, India. Electronic address: anabik_r@isical.ac.in. 2. CVPR Unit, Indian Statistical Institute, Kolkata 700108, India. Electronic address: utpal@isical.ac.in. 3. Human Genetics Unit, Indian Statistical Unit, Kolkata, West Bengal 700108, India. Electronic address: aditichandra.2906@gmail.com. 4. Human Genetics Unit, Indian Statistical Unit, Kolkata, West Bengal 700108, India. Electronic address: rchatterjee@isical.ac.in. 5. Consultant Dermatologist, Uttarpara, Hooghly, West Bengal 712258, India. Electronic address: dr_senapati@rediffmail.com.
Abstract
BACKGROUND AND OBJECTIVE: Development of machine assisted tools for automatic analysis of psoriasis skin biopsy image plays an important role in clinical assistance. Development of automatic approach for accurate segmentation of psoriasis skin biopsy image is the initial prerequisite for developing such system. However, the complex cellular structure, presence of imaging artifacts, uneven staining variation make the task challenging. This paper presents a pioneering attempt for automatic segmentation of psoriasis skin biopsy images. METHODS: Several deep neural architectures are tried for segmenting psoriasis skin biopsy images. Deep models are used for classifying the super-pixels generated by Simple Linear Iterative Clustering (SLIC) and the segmentation performance of these architectures is compared with the traditional hand-crafted feature based classifiers built on popularly used classifiers like K-Nearest Neighbor (KNN), Support Vector Machine (SVM) and Random Forest (RF). A U-shaped Fully Convolutional Neural Network (FCN) is also used in an end to end learning fashion where input is the original color image and the output is the segmentation class map for the skin layers. RESULTS: An annotated real psoriasis skin biopsy image data set of ninety (90) images is developed and used for this research. The segmentation performance is evaluated with two metrics namely, Jaccard's Coefficient (JC) and the Ratio of Correct Pixel Classification (RCPC) accuracy. The experimental results show that the CNN based approaches outperform the traditional hand-crafted feature based classification approaches. CONCLUSIONS: The present research shows that practical system can be developed for machine assisted analysis of psoriasis disease.
BACKGROUND AND OBJECTIVE: Development of machine assisted tools for automatic analysis of psoriasis skin biopsy image plays an important role in clinical assistance. Development of automatic approach for accurate segmentation of psoriasis skin biopsy image is the initial prerequisite for developing such system. However, the complex cellular structure, presence of imaging artifacts, uneven staining variation make the task challenging. This paper presents a pioneering attempt for automatic segmentation of psoriasis skin biopsy images. METHODS: Several deep neural architectures are tried for segmenting psoriasis skin biopsy images. Deep models are used for classifying the super-pixels generated by Simple Linear Iterative Clustering (SLIC) and the segmentation performance of these architectures is compared with the traditional hand-crafted feature based classifiers built on popularly used classifiers like K-Nearest Neighbor (KNN), Support Vector Machine (SVM) and Random Forest (RF). A U-shaped Fully Convolutional Neural Network (FCN) is also used in an end to end learning fashion where input is the original color image and the output is the segmentation class map for the skin layers. RESULTS: An annotated real psoriasis skin biopsy image data set of ninety (90) images is developed and used for this research. The segmentation performance is evaluated with two metrics namely, Jaccard's Coefficient (JC) and the Ratio of Correct Pixel Classification (RCPC) accuracy. The experimental results show that the CNN based approaches outperform the traditional hand-crafted feature based classification approaches. CONCLUSIONS: The present research shows that practical system can be developed for machine assisted analysis of psoriasis disease.
Keywords:
Data set and Evaluation; Deep Convolutional Neural Network (DCNN); Dermis-Epidermis; Fully Convolutional Neural Network (FCN); Psoriasis Biopsy image; Simple Linear Iterative Clustering (SLIC)