Literature DB >> 29648875

Regulated Proteolysis in Bacteria.

Samar A Mahmoud1, Peter Chien1.   

Abstract

Regulated proteolysis is a vital process that affects all living things. Bacteria use energy-dependent AAA+ proteases to power degradation of misfolded and native regulatory proteins. Given that proteolysis is an irreversible event, specificity and selectivity in degrading substrates are key. Specificity is often augmented through the use of adaptors that modify the inherent specificity of the proteolytic machinery. Regulated protein degradation is intricately linked to quality control, cell-cycle progression, and physiological transitions. In this review, we highlight recent work that has shed light on our understanding of regulated proteolysis in bacteria. We discuss the role AAA+ proteases play during balanced growth as well as how these proteases are deployed during changes in growth. We present examples of how protease selectivity can be controlled in increasingly complex ways. Finally, we describe how coupling a core recognition determinant to one or more modifying agents is a general theme for regulated protein degradation.

Entities:  

Keywords:  AAA+ proteases; ClpP; ClpX; Lon

Mesh:

Substances:

Year:  2018        PMID: 29648875      PMCID: PMC6013389          DOI: 10.1146/annurev-biochem-062917-012848

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  108 in total

1.  Overlapping recognition determinants within the ssrA degradation tag allow modulation of proteolysis.

Authors:  J M Flynn; I Levchenko; M Seidel; S H Wickner; R T Sauer; T A Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-04       Impact factor: 11.205

2.  Overproduction of the Lon protease triggers inhibition of translation in Escherichia coli: involvement of the yefM-yoeB toxin-antitoxin system.

Authors:  Susanne K Christensen; Geneviève Maenhaut-Michel; Natacha Mine; Susan Gottesman; Kenn Gerdes; Laurence Van Melderen
Journal:  Mol Microbiol       Date:  2004-03       Impact factor: 3.501

Review 3.  Structure and function of the bacterial AAA protease FtsH.

Authors:  Sina Langklotz; Ulrich Baumann; Franz Narberhaus
Journal:  Biochim Biophys Acta       Date:  2011-09-08

Review 4.  Regulated Proteolysis in Bacteria: Caulobacter.

Authors:  Kamal Kishore Joshi; Peter Chien
Journal:  Annu Rev Genet       Date:  2016-10-13       Impact factor: 16.830

5.  Regulatory cohesion of cell cycle and cell differentiation through interlinked phosphorylation and second messenger networks.

Authors:  Sören Abel; Peter Chien; Paul Wassmann; Tilman Schirmer; Volkhard Kaever; Michael T Laub; Tania A Baker; Urs Jenal
Journal:  Mol Cell       Date:  2011-08-19       Impact factor: 17.970

6.  Phosphorylation of human TFAM in mitochondria impairs DNA binding and promotes degradation by the AAA+ Lon protease.

Authors:  Bin Lu; Jae Lee; Xiaobo Nie; Min Li; Yaroslav I Morozov; Sundararajan Venkatesh; Daniel F Bogenhagen; Dmitry Temiakov; Carolyn K Suzuki
Journal:  Mol Cell       Date:  2012-11-29       Impact factor: 17.970

7.  Second messenger-mediated spatiotemporal control of protein degradation regulates bacterial cell cycle progression.

Authors:  Anna Duerig; Sören Abel; Marc Folcher; Micael Nicollier; Torsten Schwede; Nicolas Amiot; Bernd Giese; Urs Jenal
Journal:  Genes Dev       Date:  2009-01-01       Impact factor: 11.361

8.  Proteotoxic stress induces a cell-cycle arrest by stimulating Lon to degrade the replication initiator DnaA.

Authors:  Kristina Jonas; Jing Liu; Peter Chien; Michael T Laub
Journal:  Cell       Date:  2013-08-01       Impact factor: 41.582

Review 9.  Mechanistic insights into bacterial AAA+ proteases and protein-remodelling machines.

Authors:  Adrian O Olivares; Tania A Baker; Robert T Sauer
Journal:  Nat Rev Microbiol       Date:  2015-12-07       Impact factor: 60.633

10.  Regulated proteolysis of a transcription factor complex is critical to cell cycle progression in Caulobacter crescentus.

Authors:  Kasia G Gora; Amber Cantin; Matthew Wohlever; Kamal K Joshi; Barrett S Perchuk; Peter Chien; Michael T Laub
Journal:  Mol Microbiol       Date:  2013-02-25       Impact factor: 3.501

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  42 in total

1.  Kinetic versus thermodynamic control of mutational effects on protein homeostasis: A perspective from computational modeling and experiment.

Authors:  Kristine Faye R Pobre; David L Powers; Kingshuk Ghosh; Lila M Gierasch; Evan T Powers
Journal:  Protein Sci       Date:  2019-05-24       Impact factor: 6.725

2.  Lon Protease Removes Excess Signal Recognition Particle Protein in Escherichia coli.

Authors:  Beate Sauerbrei; Jan Arends; Danja Schünemann; Franz Narberhaus
Journal:  J Bacteriol       Date:  2020-06-25       Impact factor: 3.490

3.  The Cleavage Profile of Protein Substrates by ClpXP Reveals Deliberate Starts and Pauses.

Authors:  Catherine Y Tremblay; Robert H Vass; Richard W Vachet; Peter Chien
Journal:  Biochemistry       Date:  2020-11-02       Impact factor: 3.162

4.  Synonymous codon substitutions perturb cotranslational protein folding in vivo and impair cell fitness.

Authors:  Ian M Walsh; Micayla A Bowman; Iker F Soto Santarriaga; Anabel Rodriguez; Patricia L Clark
Journal:  Proc Natl Acad Sci U S A       Date:  2020-02-03       Impact factor: 11.205

5.  Programmed Proteolysis of Chemotaxis Proteins in Sinorhizobium meliloti: Features in the C-Terminal Region Control McpU Degradation.

Authors:  Timofey D Arapov; Jiwoo Kim; Rachel M Cronin; Maya Pahima; Birgit E Scharf
Journal:  J Bacteriol       Date:  2020-08-10       Impact factor: 3.490

6.  Selectivity among Anti-σ Factors by Mycobacterium tuberculosis ClpX Influences Intracellular Levels of Extracytoplasmic Function σ Factors.

Authors:  Anuja C Joshi; Prabhjot Kaur; Radhika K Nair; Deepti S Lele; Vinay Kumar Nandicoori; Balasubramanian Gopal
Journal:  J Bacteriol       Date:  2019-02-25       Impact factor: 3.490

7.  Proteogenomic Insights into the Physiology of Marine, Sulfate-Reducing, Filamentous Desulfonema limicola and Desulfonema magnum.

Authors:  Vanessa Schnaars; Lars Wöhlbrand; Sabine Scheve; Christina Hinrichs; Richard Reinhardt; Ralf Rabus
Journal:  Microb Physiol       Date:  2021-02-19

8.  The Lon Protease Links Nucleotide Metabolism with Proteotoxic Stress.

Authors:  Rilee D Zeinert; Hamid Baniasadi; Benjamin P Tu; Peter Chien
Journal:  Mol Cell       Date:  2020-08-04       Impact factor: 17.970

9.  Stress Can Induce Transcription of Toxin-Antitoxin Systems without Activating Toxin.

Authors:  Michele LeRoux; Peter H Culviner; Yue J Liu; Megan L Littlehale; Michael T Laub
Journal:  Mol Cell       Date:  2020-06-12       Impact factor: 17.970

Review 10.  Structural determinants of regulated proteolysis in pathogenic bacteria by ClpP and the proteasome.

Authors:  Shoshanna C Kahne; K Heran Darwin
Journal:  Curr Opin Struct Biol       Date:  2020-11-19       Impact factor: 6.809

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