Literature DB >> 29637228

Engineering CRISPR/Cpf1 with tRNA promotes genome editing capability in mammalian systems.

Han Wu1,2,3, Qishuai Liu1,2,3, Hui Shi1,2,3, Jingke Xie1,2,3, Quanjun Zhang1,3, Zhen Ouyang1,3, Nan Li1,2,3, Yi Yang4, Zhaoming Liu1,3, Yu Zhao1,3, Chengdan Lai1,3, Degong Ruan1,2,3, Jiangyun Peng1,2,3, Weikai Ge1,2,3, Fangbing Chen1,2,3, Nana Fan1,3, Qin Jin1,2,3, Yanhui Liang1,2,3, Ting Lan1,2,3, Xiaoyu Yang1,5, Xiaoshan Wang1,2,3, Zhiyong Lei6,7, Pieter A Doevendans6,7, Joost P G Sluijter6,7, Kepin Wang8,9, Xiaoping Li10,11, Liangxue Lai12,13,14.   

Abstract

CRISPR/Cpf1 features a number of properties that are distinct from CRISPR/Cas9 and provides an excellent alternative to Cas9 for genome editing. To date, genome engineering by CRISPR/Cpf1 has been reported only in human cells and mouse embryos of mammalian systems and its efficiency is ultimately lower than that of Cas9 proteins from Streptococcus pyogenes. The application of CRISPR/Cpf1 for targeted mutagenesis in other animal models has not been successfully verified. In this study, we designed and optimized a guide RNA (gRNA) transcription system by inserting a transfer RNA precursor (pre-tRNA) sequence downstream of the gRNA for Cpf1, protecting gRNA from immediate digestion by 3'-to-5' exonucleases. Using this new gRNAtRNA system, genome editing, including indels, large fragment deletion and precise point mutation, was induced in mammalian systems, showing significantly higher efficiency than the original Cpf1-gRNA system. With this system, gene-modified rabbits and pigs were generated by embryo injection or somatic cell nuclear transfer (SCNT) with an efficiency comparable to that of the Cas9 gRNA system. These results demonstrated that this refined gRNAtRNA system can boost the targeting capability of CRISPR/Cpf1 toolkits.

Entities:  

Keywords:  CRISPR/Cpf1; Genome editing; Pig; Rabbit; gRNAtRNA system

Mesh:

Substances:

Year:  2018        PMID: 29637228     DOI: 10.1007/s00018-018-2810-3

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  41 in total

1.  A mutation in the human phospholamban gene, deleting arginine 14, results in lethal, hereditary cardiomyopathy.

Authors:  Kobra Haghighi; Fotis Kolokathis; Anthony O Gramolini; Jason R Waggoner; Luke Pater; Roy A Lynch; Guo-Chang Fan; Dimitris Tsiapras; Rohan R Parekh; Gerald W Dorn; David H MacLennan; Dimitrios Th Kremastinos; Evangelia G Kranias
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-23       Impact factor: 11.205

2.  Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease.

Authors:  Seung Woo Cho; Sojung Kim; Jong Min Kim; Jin-Soo Kim
Journal:  Nat Biotechnol       Date:  2013-01-29       Impact factor: 54.908

3.  Efficient genome editing by CRISPR/Cas9 with a tRNA-sgRNA fusion in the methylotrophic yeast Ogataea polymorpha.

Authors:  Minori Numamoto; Hiromi Maekawa; Yoshinobu Kaneko
Journal:  J Biosci Bioeng       Date:  2017-06-27       Impact factor: 2.894

4.  Targeted mutagenesis in mice by electroporation of Cpf1 ribonucleoproteins.

Authors:  Junho K Hur; Kyoungmi Kim; Kyung Wook Been; Gayoung Baek; Sunghyeok Ye; Junseok W Hur; Seuk-Min Ryu; Youn Su Lee; Jin-Soo Kim
Journal:  Nat Biotechnol       Date:  2016-06-06       Impact factor: 54.908

5.  Generation of knockout mice by Cpf1-mediated gene targeting.

Authors:  Yongsub Kim; Seung-A Cheong; Jong Geol Lee; Sang-Wook Lee; Myeong Sup Lee; In-Jeoung Baek; Young Hoon Sung
Journal:  Nat Biotechnol       Date:  2016-06-06       Impact factor: 54.908

6.  The molecular basis for Duchenne versus Becker muscular dystrophy: correlation of severity with type of deletion.

Authors:  M Koenig; A H Beggs; M Moyer; S Scherpf; K Heindrich; T Bettecken; G Meng; C R Müller; M Lindlöf; H Kaariainen; A de la Chapellet; A Kiuru; M L Savontaus; H Gilgenkrantz; D Récan; J Chelly; J C Kaplan; A E Covone; N Archidiacono; G Romeo; S Liechti-Gailati; V Schneider; S Braga; H Moser; B T Darras; P Murphy; U Francke; J D Chen; G Morgan; M Denton; C R Greenberg; K Wrogemann; L A Blonden; M B van Paassen; G J van Ommen; L M Kunkel
Journal:  Am J Hum Genet       Date:  1989-10       Impact factor: 11.025

7.  Efficient targeted mutagenesis of rice and tobacco genomes using Cpf1 from Francisella novicida.

Authors:  Akira Endo; Mikami Masafumi; Hidetaka Kaya; Seiichi Toki
Journal:  Sci Rep       Date:  2016-12-01       Impact factor: 4.379

8.  The CCTL (Cpf1-assisted Cutting and Taq DNA ligase-assisted Ligation) method for efficient editing of large DNA constructs in vitro.

Authors:  Chao Lei; Shi-Yuan Li; Jia-Kun Liu; Xuan Zheng; Guo-Ping Zhao; Jin Wang
Journal:  Nucleic Acids Res       Date:  2017-05-19       Impact factor: 16.971

9.  High-efficiency CRISPR/Cas9 multiplex gene editing using the glycine tRNA-processing system-based strategy in maize.

Authors:  Weiwei Qi; Tong Zhu; Zhongrui Tian; Chaobin Li; Wei Zhang; Rentao Song
Journal:  BMC Biotechnol       Date:  2016-08-11       Impact factor: 2.563

10.  Evolved Cas9 variants with broad PAM compatibility and high DNA specificity.

Authors:  Johnny H Hu; Shannon M Miller; Maarten H Geurts; Weixin Tang; Liwei Chen; Ning Sun; Christina M Zeina; Xue Gao; Holly A Rees; Zhi Lin; David R Liu
Journal:  Nature       Date:  2018-02-28       Impact factor: 49.962

View more
  14 in total

1.  Electroporation of AsCpf1/RNP at the Zygote Stage is an Efficient Genome Editing Method to Generate Knock-Out Mice Deficient in Leukemia Inhibitory Factor.

Authors:  Yeon Sun Kim; Gyeong Ryeong Kim; Mira Park; Seung Chel Yang; So Hee Park; Ji Eun Won; Ju Hee Lee; Ha Eun Shin; Haengseok Song; Hye-Ryun Kim
Journal:  Tissue Eng Regen Med       Date:  2019-11-19       Impact factor: 4.169

2.  Recent advances of genome editing and related technologies in China.

Authors:  Wen Sun; Haoyi Wang
Journal:  Gene Ther       Date:  2020-08-03       Impact factor: 5.250

3.  Boosting activity of high-fidelity CRISPR/Cas9 variants using a tRNAGln-processing system in human cells.

Authors:  Xiubin He; Yufei Wang; Fayu Yang; Bang Wang; Haihua Xie; Lingkai Gu; Tianyuan Zhao; Xiexie Liu; Dingbo Zhang; Qianwen Ren; Xiaoyu Liu; Yong Liu; Caixia Gao; Feng Gu
Journal:  J Biol Chem       Date:  2019-04-22       Impact factor: 5.157

4.  Double knock-in pig models with elements of binary Tet-On and phiC31 integrase systems for controllable and switchable gene expression.

Authors:  Qin Jin; Xiaoyu Yang; Shixue Gou; Xiaoyi Liu; Zhenpeng Zhuang; Yanhui Liang; Hui Shi; Jiayuan Huang; Han Wu; Yu Zhao; Zhen Ouyang; Quanjun Zhang; Zhaoming Liu; Fangbing Chen; Weikai Ge; Jingke Xie; Nan Li; Chengdan Lai; Xiaozhu Zhao; Jiaowei Wang; Meng Lian; Lei Li; Longquan Quan; Yinghua Ye; Liangxue Lai; Kepin Wang
Journal:  Sci China Life Sci       Date:  2022-05-18       Impact factor: 6.038

Review 5.  Current and Prospective Applications of CRISPR-Cas12a in Pluricellular Organisms.

Authors:  Shaheen Khan; Erwan Sallard
Journal:  Mol Biotechnol       Date:  2022-08-08       Impact factor: 2.860

6.  CRISPR-Cas12a nucleases function with structurally engineered crRNAs: SynThetic trAcrRNA.

Authors:  D J Jedrzejczyk; L D Poulsen; M Mohr; N D Damas; S Schoffelen; A Barghetti; R Baumgartner; B T Weinert; T Warnecke; R T Gill
Journal:  Sci Rep       Date:  2022-07-16       Impact factor: 4.996

Review 7.  Application of genome-editing systems to enhance available pig resources for agriculture and biomedicine.

Authors:  Kiho Lee; Kayla Farrell; Kyungjun Uh
Journal:  Reprod Fertil Dev       Date:  2019-01       Impact factor: 2.311

Review 8.  Genome Editing of Pigs for Agriculture and Biomedicine.

Authors:  Huaqiang Yang; Zhenfang Wu
Journal:  Front Genet       Date:  2018-09-04       Impact factor: 4.599

Review 9.  How to create state-of-the-art genetic model systems: strategies for optimal CRISPR-mediated genome editing.

Authors:  Yannik Bollen; Jasmin Post; Bon-Kyoung Koo; Hugo J G Snippert
Journal:  Nucleic Acids Res       Date:  2018-07-27       Impact factor: 16.971

10.  Efficient base editing for multiple genes and loci in pigs using base editors.

Authors:  Jingke Xie; Weikai Ge; Nan Li; Qishuai Liu; Fangbing Chen; Xiaoyu Yang; Xingyun Huang; Zhen Ouyang; Quanjun Zhang; Yu Zhao; Zhaoming Liu; Shixue Gou; Han Wu; Chengdan Lai; Nana Fan; Qin Jin; Hui Shi; Yanhui Liang; Ting Lan; Longquan Quan; Xiaoping Li; Kepin Wang; Liangxue Lai
Journal:  Nat Commun       Date:  2019-06-28       Impact factor: 14.919

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.