Literature DB >> 29637199

BiOnIC: A Catalog of User Interactions with Biomedical Ontologies.

Maulik R Kamdar1, Simon Walk1, Tania Tudorache1, Mark A Musen1.   

Abstract

BiOnIC is a catalog of aggregated statistics of user clicks, queries, and reuse counts for access to over 200 biomedical ontologies. BiOnIC also provides anonymized sequences of classes accessed by users over a period of four years. To generate the statistics, we processed the access logs of BioPortal, a large open biomedical ontology repository. We publish the BiOnIC data using DCAT and SKOS metadata standards. The BiOnIC catalog has a wide range of applicability, which we demonstrate through its use in three different types of applications. To our knowledge, this type of interaction data stemming from a real-world, large-scale application has not been published before. We expect that the catalog will become an important resource for researchers and developers in the Semantic Web community by providing novel insights into how ontologies are explored, queried and reused. The BiOnIC catalog may ultimately assist in the more informed development of intelligent user interfaces for semantic resources through interface customization, prediction of user browsing and querying behavior, and ontology summarization. The BiOnIC catalog is available at: http://onto-apps.stanford.edu/bionic.

Entities:  

Keywords:  log analysis; ontology exploration; reuse; user behavior

Year:  2017        PMID: 29637199      PMCID: PMC5889949          DOI: 10.1007/978-3-319-68204-4_13

Source DB:  PubMed          Journal:  Semant Web ISWC


  4 in total

1.  Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.

Authors:  M Ashburner; C A Ball; J A Blake; D Botstein; H Butler; J M Cherry; A P Davis; K Dolinski; S S Dwight; J T Eppig; M A Harris; D P Hill; L Issel-Tarver; A Kasarskis; S Lewis; J C Matese; J E Richardson; M Ringwald; G M Rubin; G Sherlock
Journal:  Nat Genet       Date:  2000-05       Impact factor: 38.330

2.  Biomedical ontologies in action: role in knowledge management, data integration and decision support.

Authors:  O Bodenreider
Journal:  Yearb Med Inform       Date:  2008

3.  A Systematic Analysis of Term Reuse and Term Overlap across Biomedical Ontologies.

Authors:  Maulik R Kamdar; Tania Tudorache; Mark A Musen
Journal:  Semant Web       Date:  2017       Impact factor: 2.214

4.  BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications.

Authors:  Patricia L Whetzel; Natalya F Noy; Nigam H Shah; Paul R Alexander; Csongor Nyulas; Tania Tudorache; Mark A Musen
Journal:  Nucleic Acids Res       Date:  2011-06-14       Impact factor: 16.971

  4 in total
  1 in total

1.  Analyzing user interactions with biomedical ontologies: A visual perspective.

Authors:  Maulik R Kamdar; Simon Walk; Tania Tudorache; Mark A Musen
Journal:  Web Semant       Date:  2017-12-20       Impact factor: 1.897

  1 in total

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