| Literature DB >> 29631626 |
Rayda Ben Ayed1, Karim Ennouri2, Sezai Ercişli3, Hajer Ben Hlima4, Mohsen Hanana5, Slim Smaoui6, Ahmed Rebai2, Fabienne Moreau7.
Abstract
BACKGROUND: Virgin olive oil is appreciated for its particular aroma and taste and is recognized worldwide for its nutritional value and health benefits. The olive oil contains a vast range of healthy compounds such as monounsaturated free fatty acids, especially, oleic acid. The SAD.1 polymorphism localized in the Stearoyl-acyl carrier protein desaturase gene (SAD) was genotyped and showed that it is associated with the oleic acid composition of olive oil samples. However, the effect of polymorphisms in fatty acid-related genes on olive oil monounsaturated and saturated fatty acids distribution in the Tunisian olive oil varieties is not understood.Entities:
Keywords: Fatty acid; Oleic acid; SAD; SNP; Virgin olive oil
Mesh:
Substances:
Year: 2018 PMID: 29631626 PMCID: PMC5891997 DOI: 10.1186/s12944-018-0715-7
Source DB: PubMed Journal: Lipids Health Dis ISSN: 1476-511X Impact factor: 3.876
Characteristics of SAD.1 SNP marker
| Gene name | SNP code | Primer sequence (5′ → 3′)a | Tm b | PIC | AF | GF |
|---|---|---|---|---|---|---|
|
| SAD.1(T/C) | 5’gcaatatgaaagctccacat3’ 5’gtgccattgcgcatagcaaa3’ | 57 °C | 0.439 | TT = 0.470 |
PIC Polymorphism Content Information, AF Allele frequencies, GF Genotype frequencies
aPrimers designed in this study
bannealing temperature for PCR amplification
Fatty acids composition in the studied olive oil varieties
| SFA | IFA | MUFA | PUFA | C16:0 | C16:1 | C18:0 | C18:1 | C18:2 | C18:3 | C20:0 | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Zarrazi | 13,39 ± 0,27 | 89,61 ± 2,69 | 78,28 ± 3,13 | 12,36 ± 0,12 | 10,30 ± 0,21 | 0,82 ± 0,02 | 2,32 ± 0,09 | 75,19 ± 0,75 | 13,39 ± 0,2 | 0,59 ± 0,02 | 0,41 ± 0,02 |
| Chetoui | 15,45 ± 0,31 | 87,55 ± 2,63 | 70,04 ± 2,8 | 18,54 ± 0,19 | 13,13 ± 0,26 | 0,52 ± 0,02 | 1,96 ± 0,08 | 68,50 ± 0,68 | 17,51 ± 0,3 | 0,67 ± 0,01 | 0,39 ± 0,01 |
| Chemchali | 18,54 ± 0,37 | 84,46 ± 2,53 | 72,10 ± 2,88 | 13,39 ± 0,13 | 15,97 ± 0,32 | 1,96 ± 0,03 | 2,16 ± 0,09 | 67,98 ± 0,55 | 14,16 ± 0,2 | 0,46 ± 0,01 | 0,31 ± 0,01 |
| Oueslati | 13,39 ± 0,27 | 89,61 ± 2,69 | 77,25 ± 3,09 | 11,33 ± 0,11 | 10,82 ± 0,22 | 0,88 ± 0,03 | 2,06 ± 0,08 | 75,71 ± 0,77 | 12,36 ± 0,5 | 0,57 ± 0,03 | 0,41 ± 0,02 |
| El Horr | 18,54 ± 0,37 | 84,15 ± 2,52 | 74,16 ± 2,97 | 9,99 ± 0,1 | 15,97 ± 0,3 | 2,06 ± 0,03 | 1,18 ± 0,05 | 72,62 ± 0,7 | 10,30 ± 0,4 | 0,57 ± 0,05 | 0,28 ± 0,02 |
| Toffahi | 17,51 ± 0,35 | 85,08 ± 2,55 | 70,04 ± 2,8 | 15,04 ± 0,15 | 14,68 ± 0,25 | 2,01 ± 0,06 | 2,06 ± 0,08 | 69,01 ± 0,5 | 14,16 ± 0,55 | 0,57 ± 0,04 | 0,36 ± 0,04 |
| Fakhari | 16,48 ± 0,33 | 86,52 ± 2,6 | 75,19 ± 3,01 | 11,85 ± 0,12 | 15,97 ± 0,31 | 1,29 ± 0,04 | 3,66 ± 0,15 | 69,27 ± 0,9 | 11,54 ± 0,25 | 0,55 ± 0,05 | 0,65 ± 0,03 |
| Fougi | 19,57 ± 0,39 | 83,43 ± 2,5 | 69,01 ± 2,76 | 14,42 ± 0,14 | 15,45 ± 0,3 | 1,91 ± 0,06 | 1,39 ± 0,06 | 66,95 ± 0,66 | 15,97 ± 0,32 | 0,78 ± 0,05 | 0,46 ± 0,02 |
| Meski | 19,57 ± 0,39 | 83,43 ± 2,5 | 69,01 ± 2,76 | 14,42 ± 0,14 | 17,51 ± 0,34 | 0,67 ± 0,02 | 1,60 ± 0,06 | 53,56 ± 0,5 | 27,30 ± 0,55 | 0,98 ± 0,03 | 0,28 ± 0,01 |
| Tounsi | 16,48 ± 0,33 | 86,31 ± 2,5 | 78,28 ± 3,13 | 8,03 ± 0,08 | 13,13 ± 0,26 | 1,13 ± 0,03 | 2,16 ± 0,09 | 77,25 ± 0,5 | 7,83 ± 0,16 | 0,62 ± 0,02 | 0,38 ± 0,01 |
| Besbessi | 19,57 ± 0,39 | 83,33 ± 2,5 | 67,98 ± 2,72 | 15,45 ± 0,15 | 17,87 ± 0,39 | 1,91 ± 0,06 | 1,49 ± 0,05 | 65,41 ± 0,6 | 14,94 ± 0,3 | 0,80 ± 0,01 | 0,31 ± 0,02 |
| Chemlali Sfax | 21,63 ± 0,43 | 81,16 ± 2,43 | 61,80 ± 2,47 | 19,57 ± 0,2 | 19,57 ± 0,39 | 2,68 ± 0,08 | 1,98 ± 0,07 | 58,71 ± 0,59 | 19,57 ± 0,39 | 0,72 ± 0,02 | 0,31 ± 0,02 |
| Chemlali tataouine | 20,60 ± 0,41 | 81,99 ± 2,46 | 73,13 ± 2,93 | 8,65 ± 0,09 | 16,48 ± 0,33 | 2,58 ± 0,09 | 2,37 ± 0,1 | 70,04 ± 0,7 | 10,30 ± 0,21 | 0,62 ± 0,02 | 0,31 ± 0,03 |
| Zalmati | 22,66 ± 0,45 | 80,34 ± 2,41 | 61,80 ± 2,47 | 18,54 ± 0,19 | 19,88 ± 0,4 | 2,37 ± 0,07 | 2,27 ± 0,12 | 59,43 ± 0,6 | 17,82 ± 0,36 | 0,58 ± 0,03 | 0,32 ± 0,02 |
| Chemlali ontha | 18,54 ± 0,37 | 84,46 ± 2,53 | 73,13 ± 2,93 | 11,33 ± 0,11 | 15,97 ± 0,32 | 2,58 ± 0,08 | 2,37 ± 0,08 | 70,25 ± 0,7 | 10,61 ± 0,2 | 0,62 ± 0,05 | 0,31 ± 0,01 |
| Gerboui | 15,45 ± 0,31 | 87,55 ± 2,63 | 66,95 ± 2,68 | 21,63 ± 0,22 | 13,18 ± 0,26 | 0,82 ± 0,02 | 1,65 ± 0,07 | 64,99 ± 0,65 | 20,50 ± 0,51 | 0,72 ± 0,07 | 0,31 ± 0,01 |
| Jemri Ben Guerdane | 22,66 ± 0,45 | 80,34 ± 2,41 | 66,95 ± 2,68 | 13,39 ± 0,13 | 20,50 ± 0,41 | 2,24 ± 0,07 | 1,90 ± 0,09 | 64,68 ± 0,65 | 12,36 ± 0,25 | 0,82 ± 0,06 | 0,33 ± 0,01 |
SFA saturated fatty acids, IFA Insaturated fatty acids, MUFA monounsaturated fatty acids, PUFA polyunsaturated fatty acids, C16:0 Palmitic acid, C16:1 Palmitoleic acid, C18:0 Stearic acid, C18:1 Oleic acid, C18:2 Linoleic acid, C18:3 Linolenic acid, C20:0 Arachidic acid
The association between SAD.1 SNP and Fatty acid compositions using ANOVA test
| Parameters | SNP | SAD.1 |
|
|
| ||
|---|---|---|---|---|---|---|---|
| TT | CT | CC | |||||
| SFA | Mean ± SD | 16.375 ± 0.914 | 18.571 ± 0.977 | 20 ± 1.828 | 0.083 | 0.159 | 0.183 |
| IFA | Mean ± SD | 83.462 ± 0.938 | 81.414 ± 1.003 | 79.900 ± 1.876 | 0.096 | 0.182 | 0.208 |
| MUFA | Mean ± SD | 72.750 ± 1.113 | 65.857 ± 1.190 | 63.500 ± 2.227 | 0.313 | 0.561 | 0.590 |
| PUFA | Mean ± SD | 10.750 ± 0.949 | 16.000 ± 1.015 | 16.500 ± 1.898 | 0.798 | 0.963 | 0.967 |
| C16:0 | Mean ± SD | 13.750 ± 0.907 | 16.086 ± 0.969 | 18 ± 1.813 | 0.224 | 0.086 | 0.103 |
| C16:1 | Mean ± SD | 1.619 ± .271 | 1.624 ± .290 | 1.625 ± 0.543 | 0.992 | 0.990 | 0.997 |
| C18:0 | Mean ± SD | 2.206 ± .182 | 1.777 ± .195 | 1.735 ± .365 | 0.246 | 0.431 | 0.463 |
| C18:1 | Mean ± SD | 70.306 ± 1.093 | 63.514 ± 1.169 | 54.500 ± 2.186 |
|
|
|
| C18:2 | Mean ± SD | 10.981 ± 0.924 | 15.707 ± 0.988 | 22.750 ± 1.848 | 0.051 | 0.059 | 0.072 |
| C18:3 | Mean ± SD | 0.570 ± 0.035 | 0.671 ± 0.037 | 0.825 ± 0.070 | 0.171 | 0.347 | 0.379 |
| C20:0 | Mean ± SD | 0.377 ± 0.031 | 0.337 ± 0.033 | 0.287 ± 0.062 | 0.195 | 0.353 | 0.385 |
Bold values: each variable that has statistical significance for all tests was declared when P-values are < 0.05;
P P-value of ANOVA analysis, SD standard deviation
Fig. 1Directed acyclic graph representing possible SAD.1SNP marker connections with SFA, IFA, MUFA and PUFA (a), and with stearic (C18:0), oleic (C18:1), linoleic (C18:2) and linolenic (C18:3) fatty acid (b)
Pearson’s correlations of SAD.1 marker with fatty acid compositions of the studied olive oil cultivars
| Parameters | SAD.1 | |
|---|---|---|
|
|
| |
| SFA | 0.474 | 0.054 |
| IFA | −0.446 | 0.073 |
| MUFA | −0.790 |
|
| PUFS | 0.740 |
|
| C16:0 | 0.510 |
|
| C16:1 | 0.004 | 0.988 |
| C18:0 | − 0.424 | 0.090 |
| C18:1 | −0.773 |
|
| C18:2 | 0.729 |
|
| C18:3 | 0.580 |
|
| C20:0 | −0.311 | 0.224 |
Bold values: each variable that has statistical significance was declared when P-values are < 0.05
P P-value, r correlation coefficient