Literature DB >> 29631108

Genome organization at different scales: nature, formation and function.

Jacques Serizay1, Julie Ahringer2.   

Abstract

Since the discovery of chromosome territories, it has been clear that DNA within the nucleus is spatially organized. During the last decade, a tremendous body of work has described architectural features of chromatin at different spatial scales, such as A/B compartments, topologically associating domains (TADs), and chromatin loops. These features correlate with domains of chromatin marking and gene expression, supporting their relevance for gene regulation. Recent work has highlighted the dynamic nature of spatial folding and investigated mechanisms of their formation. Here we discuss current understanding and highlight key open questions in chromosome organization in animals.
Copyright © 2018 Elsevier Ltd. All rights reserved.

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Year:  2018        PMID: 29631108     DOI: 10.1016/j.ceb.2018.03.009

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  8 in total

1.  X Chromosome Domain Architecture Regulates Caenorhabditis elegans Lifespan but Not Dosage Compensation.

Authors:  Erika C Anderson; Phillip A Frankino; Ryo Higuchi-Sanabria; Qiming Yang; Qian Bian; Katie Podshivalova; Aram Shin; Cynthia Kenyon; Andrew Dillin; Barbara J Meyer
Journal:  Dev Cell       Date:  2019-09-05       Impact factor: 12.270

2.  Hi-D: nanoscale mapping of nuclear dynamics in single living cells.

Authors:  Haitham A Shaban; Roman Barth; Ludmila Recoules; Kerstin Bystricky
Journal:  Genome Biol       Date:  2020-04-20       Impact factor: 13.583

3.  Spatial modeling of biological patterns shows multiscale organization of Arabidopsis thaliana heterochromatin.

Authors:  Javier Arpòn; Kaori Sakai; Valérie Gaudin; Philippe Andrey
Journal:  Sci Rep       Date:  2021-01-11       Impact factor: 4.379

4.  Circuit topology analysis of cellular genome reveals signature motifs, conformational heterogeneity, and scaling.

Authors:  Barbara Scalvini; Helmut Schiessel; Anatoly Golovnev; Alireza Mashaghi
Journal:  iScience       Date:  2022-02-05

Review 5.  Phase Separation-Mediated Chromatin Organization and Dynamics: From Imaging-Based Quantitative Characterizations to Functional Implications.

Authors:  Woei Shyuan Ng; Hendrik Sielaff; Ziqing Winston Zhao
Journal:  Int J Mol Sci       Date:  2022-07-21       Impact factor: 6.208

6.  The anatomy of a nucleus: As revealed by chromosome painting.

Authors:  Brian D Slaughter; R Scott Hawley
Journal:  PLoS Genet       Date:  2018-07-12       Impact factor: 5.917

7.  DONSON and FANCM associate with different replisomes distinguished by replication timing and chromatin domain.

Authors:  Jing Zhang; Marina A Bellani; Ryan C James; Durga Pokharel; Yongqing Zhang; John J Reynolds; Gavin S McNee; Andrew P Jackson; Grant S Stewart; Michael M Seidman
Journal:  Nat Commun       Date:  2020-08-07       Impact factor: 14.919

8.  Nuclear Envelope Regulation of Oncogenic Processes: Roles in Pancreatic Cancer.

Authors:  Claudia C Preston; Randolph S Faustino
Journal:  Epigenomes       Date:  2018-09-02
  8 in total

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