Literature DB >> 29620291

Integrated analysis of long non‑coding RNA competing interactions revealed potential biomarkers in cervical cancer: Based on a public database.

Wen-Juan Wu1, Yang Shen2, Jing Sui1, Cheng-Yun Li1, Sheng Yang1, Si-Yi Xu1, Man Zhang3, Li-Hong Yin1, Yue-Pu Pu1, Ge-Yu Liang1.   

Abstract

Cervical cancer (CC) is a common gynecological malignancy in women worldwide. Using an RNA sequencing profile from The Cancer Genome Atlas (TCGA) and the CC patient information, the aim of the present study was to identify potential long non‑coding RNA (lncRNA) biomarkers of CC using bioinformatics analysis and building a competing endogenous RNA (ceRNA) co‑expression network. Results indicated several CC‑specific lncRNAs, which were associated with CC clinical information and selected some of them for validation and evaluated their diagnostic values. Bioinformatics analysis identified 51 CC‑specific lncRNAs (fold‑change >2 and P<0.05), and 42 of these were included in ceRNA network consisting of lncRNA‑miRNA‑mRNA interactions. Further analyses revealed that differential expression levels of 19 lncRNAs were significantly associated with different clinical features (P<0.05). A total of 11 key lncRNAs in the ceRNA network for reverse transcription‑quantitative polymerase chain reaction (RT‑qPCR) analysis to detect their expression levels in 31 pairs of CC clinical samples. The results indicated that 7 lncRNAs were upregulated and 4 lncRNAs were downregulated in CC patients. The fold‑changes between the RT‑qPCR experiments and the TCGA bioinformatics analyses were the same. Furthermore, the area under the receiver operating characteristic (ROC) curve of four lncRNAs (EMX20S, MEG3, SYS1‑DBNDD2 and MIR9‑3HG) indicated that their combined use may have a significant diagnostic value in CC (P<0.05). To the best of our knowledge, the present study is the first to have identified CC‑specific lncRNAs to construct a ceRNA network and has also provided new insights for further investigation of a lncRNA‑associated ceRNA network in CC. In additon, the verification results suggested that the method of bioinformatics analysis and screening of lncRNAs was accurate and reliable. To conclude, the use of multiple lncRNAs may thus improve diagnostic efficacy in CC. In addition, these specific lncRNAs may serve as new candidate biomarkers for clinical diagnosis, classification and prognosis of CC.

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Year:  2018        PMID: 29620291     DOI: 10.3892/mmr.2018.8846

Source DB:  PubMed          Journal:  Mol Med Rep        ISSN: 1791-2997            Impact factor:   2.952


  11 in total

1.  Exploration of the Immune-Related Long Noncoding RNA Prognostic Signature and Inflammatory Microenvironment for Cervical Cancer.

Authors:  Hui Yao; Xiya Jiang; Hengtao Fu; Yinting Yang; Qinqin Jin; Weiyu Zhang; Wujun Cao; Wei Gao; Senlin Wang; Yuting Zhu; Jie Ying; Lu Tian; Guo Chen; Zhuting Tong; Jian Qi; Shuguang Zhou
Journal:  Front Pharmacol       Date:  2022-05-19       Impact factor: 5.988

Review 2.  Molecular Mechanisms of HIV Protease Inhibitors Against HPV-Associated Cervical Cancer: Restoration of TP53 Tumour Suppressor Activities.

Authors:  Lilian Makgoo; Salerwe Mosebi; Zukile Mbita
Journal:  Front Mol Biosci       Date:  2022-05-10

3.  Suppression of miR-93-5p inhibits high-risk HPV-positive cervical cancer progression via targeting of BTG3.

Authors:  Jie Li; Zhao-Ping Chu; Hua Han; Yuan Zhang; Fei Tian; Jun-Qin Zhang; Xiang-Hua Huang
Journal:  Hum Cell       Date:  2019-01-28       Impact factor: 4.174

4.  Oncogenic HPV promotes the expression of the long noncoding RNA lnc-FANCI-2 through E7 and YY1.

Authors:  Haibin Liu; Junfen Xu; Yanqin Yang; Xiaohong Wang; Ethan Wu; Vladimir Majerciak; Tingting Zhang; Renske D M Steenbergen; Hsu-Kun Wang; Nilam S Banerjee; Yang Li; Weiguo Lu; Craig Meyers; Jun Zhu; Xing Xie; Louise T Chow; Zhi-Ming Zheng
Journal:  Proc Natl Acad Sci U S A       Date:  2021-01-19       Impact factor: 12.779

5.  MammaPrint and BluePrint comprehensively capture the cancer hallmarks in early-stage breast cancer patients.

Authors:  Josien C Haan; Rajith Bhaskaran; Architha Ellappalayam; Yannick Bijl; Christian J Griffioen; Ersan Lujinovic; William M Audeh; Frédérique Penault-Llorca; Lorenza Mittempergher; Annuska M Glas
Journal:  Genes Chromosomes Cancer       Date:  2021-12-11       Impact factor: 4.263

Review 6.  Flaming the fight against cancer cells: the role of microRNA-93.

Authors:  Milad Ashrafizadeh; Masoud Najafi; Reza Mohammadinejad; Tahereh Farkhondeh; Saeed Samarghandian
Journal:  Cancer Cell Int       Date:  2020-06-29       Impact factor: 5.722

7.  Mechanism underlying long non‑coding RNA ILF3‑AS1‑mediated inhibition of cervical cancer cell proliferation, invasion and migration, and promotion of apoptosis.

Authors:  Linmei Zhu; Ruixia Chen; Chunlin Jiang; Qingsheng Xie; Wenshuai Zhao; Xiaohong Gao; Haiming Huang
Journal:  Mol Med Rep       Date:  2021-06-03       Impact factor: 2.952

8.  Comprehensive analysis of the long noncoding RNA-associated competitive endogenous RNA network in the osteogenic differentiation of periodontal ligament stem cells.

Authors:  Lingzhi Lai; Zhaodan Wang; Yihong Ge; Wei Qiu; Buling Wu; Fuchun Fang; Huiyong Xu; Zhao Chen
Journal:  BMC Genomics       Date:  2022-01-03       Impact factor: 3.969

9.  Molecular characterization of papillary thyroid carcinoma: a potential three-lncRNA prognostic signature.

Authors:  Xin You; Sheng Yang; Jing Sui; Wenjuan Wu; Tong Liu; Siyi Xu; Yanping Cheng; Xiaoling Kong; Geyu Liang; Yongzhong Yao
Journal:  Cancer Manag Res       Date:  2018-10-08       Impact factor: 3.989

10.  Hyperoxia sensitizes hypoxic HeLa cells to ionizing radiation by downregulating HIF‑1α and VEGF expression.

Authors:  Dan Dong; Yan Fu; Feng Chen; Jing Zhang; Haiyan Jia; Jia Li; Huailin Wang; Jihong Wen
Journal:  Mol Med Rep       Date:  2020-11-20       Impact factor: 2.952

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