Literature DB >> 29611033

Aqueous ionic liquids in comparison with standard co-solutes : Differences and common principles in their interaction with protein and DNA structures.

Ewa Anna Oprzeska-Zingrebe1, Jens Smiatek2,3.   

Abstract

Ionic liquids (ILs) are versatile solvents for a broad range of biotechnological applications. Recent experimental and simulation results highlight the potential benefits of dilute ILs in aqueous solution (aqueous ILs) in order to modify protein and DNA structures systematically. In contrast to a limited number of standard co-solutes like urea, ectoine, trimethylamine-N-oxide (TMAO), or guanidinium chloride, the large amount of possible cation and anion combinations in aqueous ILs can be used to develop tailor-made stabilizers or destabilizers for specific purposes. In this review article, we highlight common principles and differences between aqueous ILs and standard co-solutes with a specific focus on their underlying macromolecular stabilization or destabilization behavior. In combination with statistical thermodynamics theories, we present an efficient framework, which is used to classify structure modification effects consistently. The crucial importance of enthalpic and entropic contributions to the free energy change upon IL-assisted macromolecular unfolding in combination with a complex destabilization mechanism is described in detail. A special focus is also set on aqueous IL-DNA interactions, for which experimental and simulation outcomes are summarized and discussed in the context of previous findings.

Entities:  

Keywords:  Co-solutes; DNA; Ionic liquids; Kirkwood-Buff theory; Proteins

Year:  2018        PMID: 29611033      PMCID: PMC5988629          DOI: 10.1007/s12551-018-0414-7

Source DB:  PubMed          Journal:  Biophys Rev        ISSN: 1867-2450


  116 in total

1.  Electrophoresis of DNA in ionic liquid coated capillary.

Authors:  Weidong Qin; Sam Fong Yau Li
Journal:  Analyst       Date:  2003-01       Impact factor: 4.616

2.  How ionic liquids can help to stabilize native proteins.

Authors:  Hermann Weingärtner; Chiara Cabrele; Christian Herrmann
Journal:  Phys Chem Chem Phys       Date:  2011-11-16       Impact factor: 3.676

3.  Peptides in the presence of aqueous ionic liquids: tunable co-solutes as denaturants or protectants?

Authors:  Volker Lesch; Andreas Heuer; Vasileios A Tatsis; Christian Holm; Jens Smiatek
Journal:  Phys Chem Chem Phys       Date:  2015-09-17       Impact factor: 3.676

4.  Influence of the ionic liquid [C4mpy][Tf2N] on the structure of the miniprotein Trp-cage.

Authors:  Joseph L Baker; Jeffrey Furbish; Gerrick E Lindberg
Journal:  J Mol Graph Model       Date:  2015-10-20       Impact factor: 2.518

5.  Room temperature ionic liquids from 20 natural amino acids.

Authors:  Kenta Fukumoto; Masahiro Yoshizawa; Hiroyuki Ohno
Journal:  J Am Chem Soc       Date:  2005-03-02       Impact factor: 15.419

6.  Direct extraction of double-stranded DNA into ionic liquid 1-butyl-3-methylimidazolium hexafluorophosphate and its quantification.

Authors:  Jian-Hua Wang; De-Hong Cheng; Xu-Wei Chen; Zhuo Du; Zhao-Lun Fang
Journal:  Anal Chem       Date:  2007-01-15       Impact factor: 6.986

7.  Groove binding mechanism of ionic liquids: a key factor in long-term stability of DNA in hydrated ionic liquids?

Authors:  Aneesh Chandran; Debostuti Ghoshdastidar; Sanjib Senapati
Journal:  J Am Chem Soc       Date:  2012-12-10       Impact factor: 15.419

Review 8.  Organic osmolytes as compatible, metabolic and counteracting cytoprotectants in high osmolarity and other stresses.

Authors:  Paul H Yancey
Journal:  J Exp Biol       Date:  2005-08       Impact factor: 3.312

9.  A phenomenological model for predicting melting temperatures of DNA sequences.

Authors:  Garima Khandelwal; Jayaram Bhyravabhotla
Journal:  PLoS One       Date:  2010-08-26       Impact factor: 3.240

10.  Concentration dependent effects of urea binding to poly(N-isopropylacrylamide) brushes: a combined experimental and numerical study.

Authors:  Samantha Micciulla; Julian Michalowsky; Martin A Schroer; Christian Holm; Regine von Klitzing; Jens Smiatek
Journal:  Phys Chem Chem Phys       Date:  2016-02-21       Impact factor: 3.676

View more
  4 in total

1.  PDADMAC/PSS Oligoelectrolyte Multilayers: Internal Structure and Hydration Properties at Early Growth Stages from Atomistic Simulations.

Authors:  Pedro A Sánchez; Martin Vögele; Jens Smiatek; Baofu Qiao; Marcello Sega; Christian Holm
Journal:  Molecules       Date:  2020-04-17       Impact factor: 4.411

2.  Tuning Water Networks via Ionic Liquid/Water Mixtures.

Authors:  Archana Verma; John P Stoppelman; And Jesse G McDaniel
Journal:  Int J Mol Sci       Date:  2020-01-08       Impact factor: 5.923

3.  Raman Spectroscopic Signature of Ectoine Conformations in Bulk Solution and Crystalline State.

Authors:  Tihomir Solomun; Marc Benjamin Hahn; Jens Smiatek
Journal:  Chemphyschem       Date:  2020-08-17       Impact factor: 3.102

4.  Ionic Liquid-Based Strategy for Predicting Protein Aggregation Propensity and Thermodynamic Stability.

Authors:  Talia A Shmool; Laura K Martin; Richard P Matthews; Jason P Hallett
Journal:  JACS Au       Date:  2022-09-09
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.