Literature DB >> 29609179

Organizing membrane-curving proteins: the emerging dynamical picture.

Mijo Simunovic1, Patricia Bassereau2, Gregory A Voth3.   

Abstract

Lipid membranes play key roles in cells, such as in trafficking, division, infection, remodeling of organelles, among others. The key step in all these processes is creating membrane curvature, typically under the control of many anchored, adhered or included proteins. However, it has become clear that the membrane itself can mediate the interactions among proteins to produce highly ordered assemblies. Computer simulations are ideally suited to investigate protein organization and the dynamics of membrane remodeling at near-micron scales, something that is extremely challenging to tackle experimentally. We review recent computational efforts in modeling protein-caused membrane deformation mechanisms, specifically focusing on coarse-grained simulations. We highlight work that exposed the membrane-mediated ordering of proteins into lines, meshwork, spirals and other assemblies, in what seems to be a very generic mechanism driven by a combination of short and long-ranged forces. Modulating the mechanical properties of membranes is an underexplored signaling mechanism in various processes deserving of more attention in the near future.
Copyright © 2018 Elsevier Ltd. All rights reserved.

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Year:  2018        PMID: 29609179      PMCID: PMC6165709          DOI: 10.1016/j.sbi.2018.03.018

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  47 in total

1.  Molecular view of the role of fusion peptides in promoting positive membrane curvature.

Authors:  Marc Fuhrmans; Siewert J Marrink
Journal:  J Am Chem Soc       Date:  2012-01-10       Impact factor: 15.419

2.  Fluid membranes can drive linear aggregation of adsorbed spherical nanoparticles.

Authors:  Anđela Sarić; Angelo Cacciuto
Journal:  Phys Rev Lett       Date:  2012-03-14       Impact factor: 9.161

3.  Bilayer deformation by the Kv channel voltage sensor domain revealed by self-assembly simulations.

Authors:  Peter J Bond; Mark S P Sansom
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-14       Impact factor: 11.205

4.  Four-scale description of membrane sculpting by BAR domains.

Authors:  Anton Arkhipov; Ying Yin; Klaus Schulten
Journal:  Biophys J       Date:  2008-05-30       Impact factor: 4.033

5.  Tubulation and aggregation of spherical nanoparticles adsorbed on vesicles.

Authors:  Amir Houshang Bahrami; Reinhard Lipowsky; Thomas R Weikl
Journal:  Phys Rev Lett       Date:  2012-10-31       Impact factor: 9.161

6.  Acceleration and suppression of banana-shaped-protein-induced tubulation by addition of small membrane inclusions of isotropic spontaneous curvatures.

Authors:  Hiroshi Noguchi
Journal:  Soft Matter       Date:  2017-11-01       Impact factor: 3.679

7.  α-Synuclein's Uniquely Long Amphipathic Helix Enhances its Membrane Binding and Remodeling Capacity.

Authors:  Anthony R Braun; Michael M Lacy; Vanessa C Ducas; Elizabeth Rhoades; Jonathan N Sachs
Journal:  J Membr Biol       Date:  2017-02-26       Impact factor: 1.843

8.  The N-Terminal Amphipathic Helix of Endophilin Does Not Contribute to Its Molecular Curvature Generation Capacity.

Authors:  Zhiming Chen; Chen Zhu; Curtis J Kuo; Jaclyn Robustelli; Tobias Baumgart
Journal:  J Am Chem Soc       Date:  2016-10-28       Impact factor: 15.419

9.  Oligomerization but Not Membrane Bending Underlies the Function of Certain F-BAR Proteins in Cell Motility and Cytokinesis.

Authors:  Nathan A McDonald; Craig W Vander Kooi; Melanie D Ohi; Kathleen L Gould
Journal:  Dev Cell       Date:  2015-12-21       Impact factor: 12.270

10.  Friction Mediates Scission of Tubular Membranes Scaffolded by BAR Proteins.

Authors:  Mijo Simunovic; Jean-Baptiste Manneville; Henri-François Renard; Emma Evergren; Krishnan Raghunathan; Dhiraj Bhatia; Anne K Kenworthy; Gregory A Voth; Jacques Prost; Harvey T McMahon; Ludger Johannes; Patricia Bassereau; Andrew Callan-Jones
Journal:  Cell       Date:  2017-06-22       Impact factor: 41.582

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  7 in total

Review 1.  Advances in coarse-grained modeling of macromolecular complexes.

Authors:  Alexander J Pak; Gregory A Voth
Journal:  Curr Opin Struct Biol       Date:  2018-11-30       Impact factor: 6.809

2.  A Review of Mechanics-Based Mesoscopic Membrane Remodeling Methods: Capturing Both the Physics and the Chemical Diversity.

Authors:  Gaurav Kumar; Satya Chaithanya Duggisetty; Anand Srivastava
Journal:  J Membr Biol       Date:  2022-10-05       Impact factor: 2.426

Review 3.  Insights into Membrane Curvature Sensing and Membrane Remodeling by Intrinsically Disordered Proteins and Protein Regions.

Authors:  Chandra Has; P Sivadas; Sovan Lal Das
Journal:  J Membr Biol       Date:  2022-04-22       Impact factor: 2.426

Review 4.  Molecular mechanisms of force production in clathrin-mediated endocytosis.

Authors:  Michael M Lacy; Rui Ma; Neal G Ravindra; Julien Berro
Journal:  FEBS Lett       Date:  2018-07-28       Impact factor: 4.124

5.  Membrane curvature sensing of the lipid-anchored K-Ras small GTPase.

Authors:  Hong Liang; Huanwen Mu; Frantz Jean-Francois; Bindu Lakshman; Suparna Sarkar-Banerjee; Yinyin Zhuang; Yongpeng Zeng; Weibo Gao; Ana Maria Zaske; Dwight V Nissley; Alemayehu A Gorfe; Wenting Zhao; Yong Zhou
Journal:  Life Sci Alliance       Date:  2019-07-11

6.  Binding mechanism of the matrix domain of HIV-1 gag on lipid membranes.

Authors:  Viviana Monje-Galvan; Gregory A Voth
Journal:  Elife       Date:  2020-08-18       Impact factor: 8.140

7.  Endosomal recycling tubule scission and integrin recycling involve the membrane curvature-supporting protein LITAF.

Authors:  Lydia Wunderley; Ling Zhang; Rebecca Yarwood; Wenxia Qin; Martin Lowe; Philip Woodman
Journal:  J Cell Sci       Date:  2021-08-03       Impact factor: 5.285

  7 in total

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