Literature DB >> 29604302

Inference on admixture fractions in a mechanistic model of recurrent admixture.

Erkan Ozge Buzbas1, Paul Verdu2.   

Abstract

Signatures of recent historical admixture are ubiquitous in human populations. We present a mechanistic model of admixture with two source populations, encompassing recurrent admixture periods and study the distribution of admixture fractions for finite but arbitrary genome size. We provide simulation-based methods to estimate the introgression parameters and discuss the implications of reaching stationarity on estimability of parameters when there are recurrent admixture events with different rates.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Bayesian computation; Introgression parameters; Population genetics; Recurrent admixture; Stationary distribution

Mesh：

Year:  2018        PMID： 29604302      PMCID： PMC6054545          DOI： 10.1016/j.tpb.2018.03.006

Source DB:  PubMed          Journal:  Theor Popul Biol        ISSN： 0040-5809            Impact factor:   1.570


  59 in total

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3.  Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies.

Authors:  Daniel Falush; Matthew Stephens; Jonathan K Pritchard
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4.  METHODS OF ANALYSIS OF THE GENETIC COMPOSITION OF A HYBRID POPULATION.

Authors:  D F ROBERTS; R W HIORNS
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5.  The genetic structure of admixed populations.

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6.  Contrasted invasion processes imprint the genetic structure of an invasive scale insect across southern Europe.

Authors:  C Kerdelhué; T Boivin; C Burban
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7.  A general mechanistic model for admixture histories of hybrid populations.

Authors:  Paul Verdu; Noah A Rosenberg
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8.  Population structure and eigenanalysis.

Authors:  Nick Patterson; Alkes L Price; David Reich
Journal:  PLoS Genet       Date:  2006-12       Impact factor: 5.917

9.  Ancient human genomes suggest three ancestral populations for present-day Europeans.

Authors:  Iosif Lazaridis; Nick Patterson; Alissa Mittnik; Gabriel Renaud; Swapan Mallick; Karola Kirsanow; Peter H Sudmant; Joshua G Schraiber; Sergi Castellano; Mark Lipson; Bonnie Berger; Christos Economou; Ruth Bollongino; Qiaomei Fu; Kirsten I Bos; Susanne Nordenfelt; Heng Li; Cesare de Filippo; Kay Prüfer; Susanna Sawyer; Cosimo Posth; Wolfgang Haak; Fredrik Hallgren; Elin Fornander; Nadin Rohland; Dominique Delsate; Michael Francken; Jean-Michel Guinet; Joachim Wahl; George Ayodo; Hamza A Babiker; Graciela Bailliet; Elena Balanovska; Oleg Balanovsky; Ramiro Barrantes; Gabriel Bedoya; Haim Ben-Ami; Judit Bene; Fouad Berrada; Claudio M Bravi; Francesca Brisighelli; George B J Busby; Francesco Cali; Mikhail Churnosov; David E C Cole; Daniel Corach; Larissa Damba; George van Driem; Stanislav Dryomov; Jean-Michel Dugoujon; Sardana A Fedorova; Irene Gallego Romero; Marina Gubina; Michael Hammer; Brenna M Henn; Tor Hervig; Ugur Hodoglugil; Aashish R Jha; Sena Karachanak-Yankova; Rita Khusainova; Elza Khusnutdinova; Rick Kittles; Toomas Kivisild; William Klitz; Vaidutis Kučinskas; Alena Kushniarevich; Leila Laredj; Sergey Litvinov; Theologos Loukidis; Robert W Mahley; Béla Melegh; Ene Metspalu; Julio Molina; Joanna Mountain; Klemetti Näkkäläjärvi; Desislava Nesheva; Thomas Nyambo; Ludmila Osipova; Jüri Parik; Fedor Platonov; Olga Posukh; Valentino Romano; Francisco Rothhammer; Igor Rudan; Ruslan Ruizbakiev; Hovhannes Sahakyan; Antti Sajantila; Antonio Salas; Elena B Starikovskaya; Ayele Tarekegn; Draga Toncheva; Shahlo Turdikulova; Ingrida Uktveryte; Olga Utevska; René Vasquez; Mercedes Villena; Mikhail Voevoda; Cheryl A Winkler; Levon Yepiskoposyan; Pierre Zalloua; Tatijana Zemunik; Alan Cooper; Cristian Capelli; Mark G Thomas; Andres Ruiz-Linares; Sarah A Tishkoff; Lalji Singh; Kumarasamy Thangaraj; Richard Villems; David Comas; Rem Sukernik; Mait Metspalu; Matthias Meyer; Evan E Eichler; Joachim Burger; Montgomery Slatkin; Svante Pääbo; Janet Kelso; David Reich; Johannes Krause
Journal:  Nature       Date:  2014-09-18       Impact factor: 49.962

10.  Reconstructing the population genetic history of the Caribbean.

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Journal:  PLoS Genet       Date:  2013-11-14       Impact factor: 5.917
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  2 in total

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Journal:  Sci Rep       Date:  2018-07-30       Impact factor: 4.379

Review 2.  Human genetic admixture through the lens of population genomics.

Authors:  Shyamalika Gopalan; Samuel Pattillo Smith; Katharine Korunes; Iman Hamid; Sohini Ramachandran; Amy Goldberg
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2022-04-18       Impact factor: 6.671
  2 in total

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