Literature DB >> 29602362

Recent progress and prospects for advancing arachnid genomics.

Jessica E Garb1, Prashant P Sharma2, Nadia A Ayoub3.   

Abstract

Arachnids exhibit tremendous species richness and adaptations of biomedical, industrial, and agricultural importance. Yet genomic resources for arachnids are limited, with the first few spider and scorpion genomes becoming accessible in the last four years. We review key insights from these genome projects, and recommend additional genomes for sequencing, emphasizing taxa of greatest value to the scientific community. We suggest greater sampling of spiders whose genomes are understudied but hold important protein recipes for silk and venom production. We further recommend arachnid genomes to address significant evolutionary topics, including the phenotypic impact of genome duplications. A barrier to high-quality arachnid genomes are assemblies based solely on short-read data, which may be overcome by long-range sequencing and other emerging methods.
Copyright © 2017. Published by Elsevier Inc.

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Year:  2017        PMID: 29602362      PMCID: PMC6658092          DOI: 10.1016/j.cois.2017.11.005

Source DB:  PubMed          Journal:  Curr Opin Insect Sci            Impact factor:   5.186


  12 in total

1.  Evolutionary pattern of karyotypes and meiosis in pholcid spiders (Araneae: Pholcidae): implications for reconstructing chromosome evolution of araneomorph spiders.

Authors:  Ivalú M Ávila Herrera; Jiří Král; Markéta Pastuchová; Martin Forman; Jana Musilová; Tereza Kořínková; František Šťáhlavský; Magda Zrzavá; Petr Nguyen; Pavel Just; Charles R Haddad; Matyáš Hiřman; Martina Koubová; David Sadílek; Bernhard A Huber
Journal:  BMC Ecol Evol       Date:  2021-05-03

2.  Transcriptomic Analysis of Pseudoscorpion Venom Reveals a Unique Cocktail Dominated by Enzymes and Protease Inhibitors.

Authors:  Carlos E Santibáñez-López; Andrew Z Ontano; Mark S Harvey; Prashant P Sharma
Journal:  Toxins (Basel)       Date:  2018-05-18       Impact factor: 4.546

3.  Transcriptome annotation and characterization of novel toxins in six scorpion species.

Authors:  Dwin G B Grashof; Harald M I Kerkkamp; Sandra Afonso; John Archer; D James Harris; Michael K Richardson; Freek J Vonk; Arie van der Meijden
Journal:  BMC Genomics       Date:  2019-08-13       Impact factor: 3.969

4.  The draft genome sequence of the spider Dysdera silvatica (Araneae, Dysderidae): A valuable resource for functional and evolutionary genomic studies in chelicerates.

Authors:  Jose Francisco Sánchez-Herrero; Cristina Frías-López; Paula Escuer; Silvia Hinojosa-Alvarez; Miquel A Arnedo; Alejandro Sánchez-Gracia; Julio Rozas
Journal:  Gigascience       Date:  2019-08-01       Impact factor: 6.524

5.  Comparative Genomics Identifies Putative Signatures of Sociality in Spiders.

Authors:  Chao Tong; Gabriella M Najm; Noa Pinter-Wollman; Jonathan N Pruitt; Timothy A Linksvayer
Journal:  Genome Biol Evol       Date:  2020-03-01       Impact factor: 3.416

6.  Gene sequence analysis of toxins from the spider Phoneutria nigriventer revealed an intronless feature.

Authors:  Ana Luiza Bittencourt Paiva; Alessandra Matavel; Bruno César Souza Silva; Clara Guerra-Duarte; Marcelo Ribeiro Vasconcelos Diniz
Journal:  J Venom Anim Toxins Incl Trop Dis       Date:  2020-04-30

Review 7.  Sex differences in spiders: from phenotype to genomics.

Authors:  Mathilde Cordellier; Jutta M Schneider; Gabriele Uhl; Nico Posnien
Journal:  Dev Genes Evol       Date:  2020-02-12       Impact factor: 0.900

Review 8.  The common house spider Parasteatoda tepidariorum.

Authors:  Hiroki Oda; Yasuko Akiyama-Oda
Journal:  Evodevo       Date:  2020-03-20       Impact factor: 2.250

Review 9.  Spider Venom: Components, Modes of Action, and Novel Strategies in Transcriptomic and Proteomic Analyses.

Authors:  Nicolas Langenegger; Wolfgang Nentwig; Lucia Kuhn-Nentwig
Journal:  Toxins (Basel)       Date:  2019-10-22       Impact factor: 4.546

10.  The brain transcriptome of the wolf spider, Schizocosa ocreata.

Authors:  Daniel Stribling; Peter L Chang; Justin E Dalton; Christopher A Conow; Malcolm Rosenthal; Eileen Hebets; Rita M Graze; Michelle N Arbeitman
Journal:  BMC Res Notes       Date:  2021-06-23
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