Literature DB >> 29601186

Periodic Density Functional Theory Study of the Structure, Raman Spectrum, and Mechanical Properties of Schoepite Mineral.

Francisco Colmenero1, Joaquín Cobos2, Vicente Timón1.   

Abstract

The structure and Raman spectrum of schoepite mineral, [(UO2)8O2(OH)12]·12H2O, was studied by means of theoretical calculations. The computations were carried out by using density functional theory with plane waves and pseudopotentials. A norm-conserving pseudopotential specific for the U atom developed in a previous work was employed. Because it was not possible to locate H atoms directly from X-ray diffraction (XRD) data by structure refinement in previous experimental studies, all of the positions of the H atoms in the full unit cell were determined theoretically. The structural results, including the lattice parameters, bond lengths, bond angles, and powder XRD pattern, were found to be in good agreement with their experimental counterparts. However, the calculations performed using the unit cell designed by Ostanin and Zeller in 2007, involving half of the atoms of the full unit cell, led to significant errors in the computed powder XRD pattern. Furthermore, Ostanin and Zeller's unit cell contains hydronium ions, H3O+, which are incompatible with the experimental information. Therefore, while the use of this schoepite model may be a very useful approximation requiring a much smaller amount of computational effort, the full unit cell should be used to study this mineral accurately. The Raman spectrum was also computed by means of density functional perturbation theory and compared with the experimental spectrum. The results were also in agreement with the experimental data. A normal-mode analysis of the theoretical spectra was performed to assign the main bands of the Raman spectrum. This assignment significantly improved the current empirical assignment of the bands of the Raman spectrum of schoepite mineral. In addition, the equation of state and elastic properties of this mineral were determined. The crystal structure of schoepite was found to be stable mechanically and dynamically. Schoepite can be described as a brittle material exhibiting small anisotropy and large compressibility in the direction perpendicular to the layers, which characterize its structure. The calculated bulk modulus, B, was ∼35 GPa.

Entities:  

Year:  2018        PMID: 29601186     DOI: 10.1021/acs.inorgchem.8b00150

Source DB:  PubMed          Journal:  Inorg Chem        ISSN: 0020-1669            Impact factor:   5.165


  6 in total

1.  Structural, mechanical, spectroscopic and thermodynamic characterization of the copper-uranyl tetrahydroxide mineral vandenbrandeite.

Authors:  Francisco Colmenero; Jakub Plášil; Joaquín Cobos; Jiří Sejkora; Vicente Timón; Jiří Čejka; Ana María Fernández; Václav Petříček
Journal:  RSC Adv       Date:  2019-12-09       Impact factor: 4.036

2.  Crystal structure, hydrogen bonding, mechanical properties and Raman spectrum of the lead uranyl silicate monohydrate mineral kasolite.

Authors:  Francisco Colmenero; Jakub Plášil; Joaquín Cobos; Jiří Sejkora; Vicente Timón; Jiří Čejka; Laura J Bonales
Journal:  RSC Adv       Date:  2019-05-16       Impact factor: 4.036

3.  Becquerelite mineral phase: crystal structure and thermodynamic and mechanical stability by using periodic DFT.

Authors:  Francisco Colmenero; Ana María Fernández; Vicente Timón; Joaquin Cobos
Journal:  RSC Adv       Date:  2018-07-10       Impact factor: 4.036

4.  Full crystal structure, hydrogen bonding and spectroscopic, mechanical and thermodynamic properties of mineral uranopilite.

Authors:  Francisco Colmenero; Jakub Plášil; Vicente Timón; Jiří Čejka
Journal:  RSC Adv       Date:  2020-08-27       Impact factor: 4.036

5.  Revealing hydrogen atoms in a highly-absorbing material: an X-ray diffraction study and Torque method calculations for lead-uranyl-oxide mineral curite.

Authors:  Seyedayat Ghazisaeed; Boris Kiefer; Jakub Plášil
Journal:  RSC Adv       Date:  2019-03-29       Impact factor: 3.361

6.  Crystal Structure, Infrared Spectrum and Elastic Anomalies in Tuperssuatsiaite.

Authors:  Francisco Colmenero; Jiří Sejkora; Jakub Plášil
Journal:  Sci Rep       Date:  2020-05-05       Impact factor: 4.379

  6 in total

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