Literature DB >> 29599458

CRISPR-based genomic tools for the manipulation of genetically intractable microorganisms.

Rebecca S Shapiro1,2,3, Alejandro Chavez4, James J Collins5,6,7.   

Abstract

Genetic manipulation of microorganisms has been crucial in understanding their biology, yet for many microbial species, robust tools for comprehensive genetic analysis were lacking until the advent of CRISPR-Cas-based gene editing techniques. In this Progress article, we discuss advances in CRISPR-based techniques for the genetic analysis of genetically intractable microorganisms, with an emphasis on mycobacteria, fungi and parasites. We discuss how CRISPR-based analyses in these organisms have enabled the discovery of novel gene functions, the investigation of genetic interaction networks and the identification of virulence factors.

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Year:  2018        PMID: 29599458     DOI: 10.1038/s41579-018-0002-7

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  19 in total

Review 1.  Microbial Interventions in Bioremediation of Heavy Metal Contaminants in Agroecosystem.

Authors:  Veni Pande; Satish Chandra Pandey; Diksha Sati; Pankaj Bhatt; Mukesh Samant
Journal:  Front Microbiol       Date:  2022-05-06       Impact factor: 6.064

2.  Host-Informed Expression of CRISPR Guide RNA for Genomic Engineering in Komagataella phaffii.

Authors:  Neil C Dalvie; Justin Leal; Charles A Whittaker; Yuchen Yang; Joseph R Brady; Kerry R Love; J Christopher Love
Journal:  ACS Synth Biol       Date:  2019-12-13       Impact factor: 5.110

Review 3.  Lipomyces starkeyi: an emerging cell factory for production of lipids, oleochemicals and biotechnology applications.

Authors:  Bonnie A McNeil; David T Stuart
Journal:  World J Microbiol Biotechnol       Date:  2018-09-12       Impact factor: 3.312

Review 4.  Common principles and best practices for engineering microbiomes.

Authors:  Christopher E Lawson; William R Harcombe; Roland Hatzenpichler; Stephen R Lindemann; Frank E Löffler; Michelle A O'Malley; Héctor García Martín; Brian F Pfleger; Lutgarde Raskin; Ophelia S Venturelli; David G Weissbrodt; Daniel R Noguera; Katherine D McMahon
Journal:  Nat Rev Microbiol       Date:  2019-09-23       Impact factor: 60.633

Review 5.  Gene Editing and Systems Biology Tools for Pesticide Bioremediation: A Review.

Authors:  Shweta Jaiswal; Dileep Kumar Singh; Pratyoosh Shukla
Journal:  Front Microbiol       Date:  2019-02-13       Impact factor: 5.640

6.  Gene silencing based on RNA-guided catalytically inactive Cas9 (dCas9): a new tool for genetic engineering in Leptospira.

Authors:  L G V Fernandes; L P Guaman; S A Vasconcellos; Marcos B Heinemann; M Picardeau; A L T O Nascimento
Journal:  Sci Rep       Date:  2019-02-12       Impact factor: 4.379

7.  A CRISPR Interference Platform for Efficient Genetic Repression in Candida albicans.

Authors:  Lauren Wensing; Jehoshua Sharma; Deeva Uthayakumar; Yannic Proteau; Alejandro Chavez; Rebecca S Shapiro
Journal:  mSphere       Date:  2019-02-13       Impact factor: 4.389

Review 8.  Enhancing the Co-utilization of Biomass-Derived Mixed Sugars by Yeasts.

Authors:  Meirong Gao; Deon Ploessl; Zengyi Shao
Journal:  Front Microbiol       Date:  2019-01-22       Impact factor: 5.640

9.  Comprehensive genetic analysis of adhesin proteins and their role in virulence of Candida albicans.

Authors:  Sierra Rosiana; Liyang Zhang; Grace H Kim; Alexey V Revtovich; Deeva Uthayakumar; Arjun Sukumaran; Jennifer Geddes-McAlister; Natalia V Kirienko; Rebecca S Shapiro
Journal:  Genetics       Date:  2021-02-09       Impact factor: 4.562

10.  Illuminating pathogen-host intimacy through optogenetics.

Authors:  Ruben Dario Arroyo-Olarte; Laura Thurow; Vera Kozjak-Pavlovic; Nishith Gupta
Journal:  PLoS Pathog       Date:  2018-07-12       Impact factor: 6.823

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