Literature DB >> 29590358

Gene Expression Classifier vs Targeted Next-Generation Sequencing in the Management of Indeterminate Thyroid Nodules.

Masha J Livhits1, Eric J Kuo1, Angela M Leung2,3, Jianyu Rao4, Mary Levin4, Michael L Douek5, Katrina R Beckett5, Kyle A Zanocco1, Dianne S Cheung2, Yaroslav A Gofnung2, Stephanie Smooke-Praw2, Michael W Yeh1.   

Abstract

Context: Molecular testing has reduced the need for diagnostic hemithyroidectomy for indeterminate thyroid nodules. No studies have directly compared molecular testing techniques. Objective: Compare the diagnostic performance of Afirma Gene Expression Classifier (GEC) with that of ThyroSeq v2 next-generation sequencing assay. Design: Parallel randomized trial, monthly block randomization of patients with Bethesda III/IV cytology to GEC or ThyroSeq v2. Setting: University of California, Los Angeles. Participants: Patients who underwent thyroid biopsy (April 2016 to June 2017). Intervention: Testing with GEC or ThyroSeq v2. Main Outcome Measure: Molecular test performance.
Results: Of 1372 thyroid nodules, 176 (13%) had indeterminate cytology and 149 of 157 eligible indeterminate nodules (95%) were included in the study. Of nodules tested with GEC, 49% were suspicious, 43% were benign, and 9% were insufficient. Of nodules tested with ThyroSeq v2, 19% were mutation positive, 77% were mutation negative, and 4% were insufficient. The specificities of GEC and ThyroSeq v2 were 66% and 91%, respectively (P = 0.002); the positive predictive values of GEC and ThyroSeq v2 were 39% and 57%, respectively. Diagnostic hemithyroidectomy was avoided in 28 patients tested with GEC (39%) and 49 patients tested with ThyroSeq v2 (62%). Surveillance ultrasonography was available for 46 nodules (45 remained stable). Conclusions: ThyroSeq v2 had higher specificity than Afirma GEC and allowed more patients to avoid surgery. Long-term surveillance is necessary to assess the false-negative rate of these particular molecular tests. Further studies are required for comparison with other available molecular diagnostics and for newer tests as they are developed.

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Year:  2018        PMID: 29590358     DOI: 10.1210/jc.2017-02754

Source DB:  PubMed          Journal:  J Clin Endocrinol Metab        ISSN: 0021-972X            Impact factor:   5.958


  9 in total

1.  The Role of Molecular Diagnostics in the Management of Indeterminate Thyroid Nodules.

Authors:  Joanna Klubo-Gwiezdzinska; Leonard Wartofsky
Journal:  J Clin Endocrinol Metab       Date:  2018-09-01       Impact factor: 5.958

Review 2.  Molecular Testing for Thyroid Nodules Including Its Interpretation and Use in Clinical Practice.

Authors:  Snehal G Patel; Sally E Carty; Andrew J Lee
Journal:  Ann Surg Oncol       Date:  2021-07-18       Impact factor: 5.344

3.  Repeat Fine Needle Aspiration Cytology Refines the Selection of Thyroid Nodules for Afirma Gene Expression Classifier Testing.

Authors:  Michiya Nishino; Roselyn Mateo; Holly Kilim; Anna Feldman; Amanda Elliott; Changyu Shen; Per-Olof Hasselgren; Helen Wang; Pamela Hartzband; James V Hennessey
Journal:  Thyroid       Date:  2021-06-22       Impact factor: 6.506

4.  Molecular Variants and Their Risks for Malignancy in Cytologically Indeterminate Thyroid Nodules.

Authors:  Whitney S Goldner; Trevor E Angell; Sallie Lou McAdoo; Joshua Babiarz; Peter M Sadow; Fadi A Nabhan; Christian Nasr; Richard T Kloos
Journal:  Thyroid       Date:  2019-09-27       Impact factor: 6.568

5.  Comparison of Afirma GEC and GSC to Nodules Without Molecular Testing in Cytologically Indeterminate Thyroid Nodules.

Authors:  Preethi Polavarapu; Abbey Fingeret; Ana Yuil-Valdes; Daniel Olson; Anery Patel; Vijay Shivaswamy; Troy D Matthias; Whitney Goldner
Journal:  J Endocr Soc       Date:  2021-10-07

6.  Diagnostic performance of next-generation sequencing and genetic profiling in thyroid nodules from a single center in China.

Authors:  Min Ren; Qianlan Yao; Longlong Bao; Zhiting Wang; Ran Wei; Qianming Bai; Bo Ping; Cai Chang; Yu Wang; Xiaoyan Zhou; Xiaoli Zhu
Journal:  Eur Thyroid J       Date:  2022-05-27

7.  Do Ultrasound Patterns and Clinical Parameters Inform the Probability of Thyroid Cancer Predicted by Molecular Testing in Nodules with Indeterminate Cytology?

Authors:  James J Figge; William E Gooding; David L Steward; Linwah Yip; Rebecca S Sippel; Samantha Peiling Yang; Randall P Scheri; Jennifer A Sipos; Susan J Mandel; Sarah E Mayson; Kenneth D Burman; Jessica M Folek; Bryan R Haugen; Julie A Sosa; Rajeev Parameswaran; Wee Boon Tan; Yuri E Nikiforov; Sally E Carty
Journal:  Thyroid       Date:  2021-09-01       Impact factor: 6.568

8.  Thyroseq v3, Afirma GSC, and microRNA Panels Versus Previous Molecular Tests in the Preoperative Diagnosis of Indeterminate Thyroid Nodules: A Systematic Review and Meta-Analysis.

Authors:  Cristina Alina Silaghi; Vera Lozovanu; Carmen Emanuela Georgescu; Raluca Diana Georgescu; Sergiu Susman; Bogdana Adriana Năsui; Anca Dobrean; Horatiu Silaghi
Journal:  Front Endocrinol (Lausanne)       Date:  2021-05-13       Impact factor: 5.555

9.  Risk Stratification Study of Indeterminate Thyroid Nodules with a next-generation Sequencing Assay with Residual ThinPrep® Material.

Authors:  Huan Zhao; Weiwei Jing; Weihua Li; Zhihui Zhang; Jian Cao; Linlin Zhao; Yue Sun; Cong Wang; Yong Wang; Huiqin Guo
Journal:  J Cancer       Date:  2020-10-21       Impact factor: 4.207

  9 in total

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