Literature DB >> 29581295

Amide-forming chemical ligation via O-acyl hydroxamic acids.

Daniel L Dunkelmann1, Yuki Hirata1, Kyle A Totaro1, Daniel T Cohen1, Chi Zhang1, Zachary P Gates2, Bradley L Pentelute2.   

Abstract

The facile rearrangement of "S-acyl isopeptides" to native peptide bonds via S,N-acyl shift is central to the success of native chemical ligation, the widely used approach for protein total synthesis. Proximity-driven amide bond formation via acyl transfer reactions in other contexts has proven generally less effective. Here, we show that under neutral aqueous conditions, "O-acyl isopeptides" derived from hydroxy-asparagine [aspartic acid-β-hydroxamic acid; Asp(β-HA)] rearrange to form native peptide bonds via an O,N-acyl shift. This process constitutes a rare example of an O,N-acyl shift that proceeds rapidly across a medium-size ring (t1/2 ∼ 15 min), and takes place in water with minimal interference from hydrolysis. In contrast to serine/threonine or tyrosine, which form O-acyl isopeptides only by the use of highly activated acyl donors and appropriate protecting groups in organic solvent, Asp(β-HA) is sufficiently reactive to form O-acyl isopeptides by treatment with an unprotected peptide-αthioester, at low mM concentration, in water. These findings were applied to an acyl transfer-based chemical ligation strategy, in which an unprotected N-terminal Asp(β-HA)-peptide and peptide-αthioester react under aqueous conditions to give a ligation product ultimately linked by a native peptide bond.

Entities:  

Keywords:  O-acyl hydroxamic acid; acyl shift; acyl transfer; chemical ligation; hydroxamic acid

Year:  2018        PMID: 29581295      PMCID: PMC5899448          DOI: 10.1073/pnas.1718356115

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  39 in total

1.  Synthesis of a selenocysteine-containing peptide by native chemical ligation.

Authors:  M D Gieselman; L Xie; W A van Der Donk
Journal:  Org Lett       Date:  2001-05-03       Impact factor: 6.005

2.  Preformed selenoesters enable rapid native chemical ligation at intractable sites.

Authors:  Thomas Durek; Paul F Alewood
Journal:  Angew Chem Int Ed Engl       Date:  2011-10-13       Impact factor: 15.336

3.  The 'O-acyl isopeptide method' for the synthesis of difficult sequence-containing peptides: application to the synthesis of Alzheimer's disease-related amyloid beta peptide (Abeta) 1-42.

Authors:  Youhei Sohma; Yoshio Hayashi; Maiko Kimura; Yousuke Chiyomori; Atsuhiko Taniguchi; Masato Sasaki; Tooru Kimura; Yoshiaki Kiso
Journal:  J Pept Sci       Date:  2005-07       Impact factor: 1.905

4.  Nucleophilic catalysis of oxime ligation.

Authors:  Anouk Dirksen; Tilman M Hackeng; Philip E Dawson
Journal:  Angew Chem Int Ed Engl       Date:  2006-11-20       Impact factor: 15.336

5.  O-acyl isopeptide method: efficient synthesis of isopeptide segment and application to racemization-free segment condensation.

Authors:  Taku Yoshiya; Hiroyuki Kawashima; Youhei Sohma; Tooru Kimura; Yoshiaki Kiso
Journal:  Org Biomol Chem       Date:  2009-05-18       Impact factor: 3.876

6.  Modern extensions of native chemical ligation for chemical protein synthesis.

Authors:  Lara R Malins; Richard J Payne
Journal:  Top Curr Chem       Date:  2015

7.  Protein splicing: estimation of the rate of O-N and S-N acyl rearrangements, the last step of the splicing process.

Authors:  Y Shao; H Paulus
Journal:  J Pept Res       Date:  1997-09

8.  Salicylaldehyde ester-induced chemoselective peptide ligations: enabling generation of natural peptidic linkages at the serine/threonine sites.

Authors:  Xuechen Li; Hiu Yung Lam; Yinfeng Zhang; Chun Kei Chan
Journal:  Org Lett       Date:  2010-04-16       Impact factor: 6.005

9.  Protein chemical synthesis by α-ketoacid-hydroxylamine ligation.

Authors:  Thibault J Harmand; Claudia E Murar; Jeffrey W Bode
Journal:  Nat Protoc       Date:  2016-05-26       Impact factor: 13.491

10.  Facile synthesis of native and protease-resistant ubiquitylated peptides.

Authors:  Caroline E Weller; Wei Huang; Champak Chatterjee
Journal:  Chembiochem       Date:  2014-05-18       Impact factor: 3.164

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  1 in total

1.  Going Native: Synthesis of Glycoproteins and Glycopeptides via Native Linkages To Study Glycan-Specific Roles in the Immune System.

Authors:  Mikkel H S Marqvorsen; Can Araman; Sander I van Kasteren
Journal:  Bioconjug Chem       Date:  2019-10-18       Impact factor: 4.774

  1 in total

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