Rescue of an aggressive female sexual courtship in mice by CRISPR/Cas9 secondary mutation in vivo.

OBJECTIVE: We had previously reported a mouse line carrying the Atypical female courtship (HoxD Afc ) allele, where an ectopic accumulation of Hoxd10 transcripts was observed in a sparse population of cells in the adult isocortex, as a result of a partial deletion of the HoxD gene cluster. Female mice carrying this allele displayed an exacerbated paracopulatory behavior, culminating in a severe mutilation of the studs' external genitals. To unequivocally demonstrate that this intriguing phenotype was indeed caused by an illegitimate function of the HOXD10 protein, we use CRISPR/Cas9 technology to induce a microdeletion into the homeobox of the Hoxd10 gene in cis with the HoxD Afc allele.
RESULTS: Females carrying this novel HoxDDel(1-9)d10hd allele no longer mutilate males. We conclude that a brain malfunction leading to a severe pathological behavior can be caused by the mere binding to DNA of a transcription factor expressed ectopically. We also show that in HoxD Afc mice, Hoxd10 was expressed in cells containing glutamate decarboxylase (Gad1) and Cholecystokinin (Cck) transcripts, corroborating our proposal that a small fraction of GABAergic neurons in adult hippocampus may participate to some aspects of female courtship.

Introduction

Although the heterozygous HoxD genotype proved semi-lethal in both sexes, only sexually mature females displayed an aberrant courtship behavior. When placed with a male for mating, and regardless of the male genotype (i.e. HoxD heterozygous or wildtype), females repeatedly bit and injured the male’s penises, often up to their complete ablation. In such adult HoxD heterozygous mice, ectopic Hoxd10 transcript accumulation was found in numerous scattered cells in the hippocampus [1], while Hox genes are never expressed rostral to the hindbrain and its derivatives [2].

Main text

Methods

The detailed protocol for the derivation of the CRISPR/Cas9 induced HoxD allele was described in [3]. Briefly, the Hoxd10 CRISPR/Cas9 allele was produced by pronuclear injection of the pX330:hSpCas9 (Addgene ID 42230) vector with the AGAGCGTTAACCTCACCGAC guide sequence oligo cloned as recommended. A small deletion occurred initiating in the guide sequence that removed 10 nucleotides (CCGACAGGCA) corresponding to mm10 positions chr2: 74695262–74695271. The deletion predicted a HOXD10 protein product with a truncated homeodomain after position 40. Breeding over more than three filial generations indicated that the indel segregated with the HoxD deficiency. Both HoxD, HoxD and HoxD stocks were maintained by serial backcrosses to (B6CBA)F1 females. Experimental adult females were 12–24 weeks of age.

For in situ hybridization analyzes, freshly dissected brains were mounted in the Optimal cutting temperature (OCT) compound and stored at − 80 °C. In most experiments, pairs of hemi-brains of HoxD and HoxD( heterozygous or wild type control adult females were mounted in the same block, cut, collected on the same slides and processed together to allow for direct comparison of the Hoxd10 signals under identical conditions. Usually four parallel sub-series of 14 µm thick coronal cryo-sections were collected, air-dried and stored at − 80 °C. One of the sub-series was stained with Cresyl violet and the position of the sections along the Coronal Allen Brain Atlas was determined. On the day of hybridization, slides were thawed, air-dried and fixed in 4% paraformaldehyde in PBS. In situ hybridizations were carried out at 63.5 °C overnight, followed by stringency washes at 61 °C. The binding of the antisense probe was revealed either by the NBT/BCIP alkaline phosphatase substrate (e.g. Allen Brain Institute http://mouse.brain-map.org/gene), or with the FASTRED alkaline phosphatase substrate (Sigma, SIG-31072) to detect DIG labeled probes, and the Tyramide amplification procedure (PerkinElmer SAT700001EA), followed by 1:100 dilution of Streptavidin Alexa Fluor 488 conjugate (Invitrogene S32354 to detect Fluorescein labeled probes.

Gad1 and Cck antisense riboprobes were synthesized using cDNA plasmid clones as templates (http://www.imagenes-bio.de). Briefly, mouse Gad1 cDNA clone IRAKp961I2154Q was linearized with Kpn1 and transcribed by T7 polymerase (Promega, #P2075). Mouse Cck cDNA clone IRAVp968E034D was linearized with EcoRI and transcribed with T3 polymerase (Promega, #P2083). Mouse Hoxd10 cDNA clone [1] was digested with EcoRI and transcribed by T7 polymerase. Labeled nucleotides were incorporated using digoxigenin (DIG) RNA Labeling Mix (Roche 1122707390), or Fluorescein RNA Labeling Mix (Roche 11685619910). We successfully detected Hoxd10 with DIG, yet not when a fluorescein labeled antisense cRNA probe was used. This may reflect a higher sensitivity of the alkaline phosphatase enzymatic reaction, which was also supported by the easier detection of the Gad1 and Cck signals with DIG/FAST RED, as compared to the fluorescein/Tyramide enhancement. In double fluorescent in situ hybridization (FISH) experiments Hoxd10 specific red signal was scored at probe concentrations, when red stained cellular profiles were detected only in the HoxD, and not in either control samples, indicating that conditions were appropriate for specific detection of Hoxd10 transcripts.

The double FISH procedure was carried out as in [4]. Pictures were taken with HBO 100 illumination using the appropriate filter sets to visualize red, green and blue fluorescence signals (set 43, 10 and 49 respectively), on a Zeiss Axioplan 2 microscope (Fig. 1f–h). Hoxd10 red hybridization signals were accepted as positive if the signal could be seen with a 5×/0.25 n.a. 0.17 Zeiss FLUAR objective using filter set 43. Upon higher magnification, a clear cytoplasm signal zone included a negative zone corresponding to the position of a cell nucleus (perikaryon). Images were taken with a Leica DFC300 FX digital color camera. Brightness and contrast were adjusted in Photoshop CS3. Red and blue or green and blue double color images were generated using the HDR2 plug-in.

Fig. 1

Inactivating mutation in HOXD10 ectopically expressed in a minor GABAergic subpopulation in adult HoxD brain. a Comparison of wild type HoxD and the HoxD alias Del(1–9) and HoxD mutant alleles. Discontinuity of the horizontal line indicates the absence of the genomic segment and the red X indicates the position of the CRISPR/Cas9 hit in the Hoxd10 homeobox, leading to the generation of the HoxD allele. b Amino-acid sequence of the HOXD10 homeodomain in both the wild type and the HoxD alleles. The three alpha helical subdomains are underlined. c Amino-acid sequence of the homeodomain in the truncated HOXD10hd protein product. The sequence of the remaining two alpha helical subdomains are underlined and an asterisk indicates an out of frame stop codon. d, e Details of representative coronal sections of heterozygous HoxD female brains. The contours of the hippocampal formation are indicated by red dots and three landmark cytoarchirectonic layers are annotated (sr, sp, so, for strata radiatum, pyramidale and oriens, respectively). d Gad1 specific antisense probe reveals positive cells distributed in all layers of Cornu Ammonis (CA). e A Cck specific antisense probe shows few strongly stained cells in all layers of CA, and a relatively weaker signal in the rest of the cells located in sp. f, g, h Simultaneous fluorescent in situ hybridization. Nuclei are shown in blue. f Expression of Cck in green (top) is detected in one of four Gad1 positive cells shown below in red (bottom) in CA3 sr. g Expression of Hoxd10 (red, top) in one of four Gad1 positive cells (green, bottom) in CA3 so. h Expression of Hoxd10 in (red, top) in one of the three Cck positive cells (green, bottom) in CA1 so

Gad1/Cck colocalizations were obtained from 3 pairs of brains, 14 sections from 3 independent hybridization reactions: 431 cells were Gad1 positive in the Cornu Ammonis (CA), of which 89 were Gad1/Cck double positive. Hoxd10/Gad1 colocalizations were obtained from one pair of brains, seven sections from five independent hybridization reactions: 131 cells were Gad1 positive in CA of which 5 were Gad1/Hoxd10 double positive. The difference in incidences of Hoxd10 over total Gad1 (prop 1 = 0.03816794) and Cck over total Gad1 (prop 2 = 0.20649652) were statistically significant (p = 1.149e−05, 2-sample test for equality of proportions with continuity correction). Cck/Hoxd10 colocalizations were obtained from one pair of brains, five sections from two independent hybridization reactions: 39 cells were Cck positive in CA, of which 9 were Cck/Hoxd10 double positive. The difference in incidences of Hoxd10 over total Gad1 (prop 1 = 0.03816794) and Hoxd10 over total Cck (prop 3 = 0.23076923) were statistically significant (p = 0.0004497, 2-sample test for equality of proportions with continuity correction). In all cases, any Hoxd10 positive cells proved positive for either Gad1 or Cck depending on the probe mix under investigation. The product of prop2 and prop3 was in good agreement with prop1 (0.046 vs 0.038), therefore we concluded that further technical repetitions with these same techniques were unlikely to bring additional information.

Results

To confirm the causal role of Hoxd10 ectopic expression in this unusual behavior, we induced a deletion in the homeobox of the Hoxd10 gene in cis with the HoxD allele as a secondary mutation (Fig. 1a). Non-homologous end joining of genomic DNA after exposure to a single guide RNA and the Cas9 endonuclease in fertilized eggs resulted in a 10 base-pair long deficiency in the Hoxd10 homeobox, giving rise to the HoxD allele. This mutant allele had lost the third alpha-helix of the HOXD10 homeodomain necessary for the binding of this transcription factor to its DNA target sites (Fig. 1b), due to a protein truncation from the 40th position of the homeodomain onwards, replacing 34 residues by a 10 residues frameshifted sequence (Fig. 1c).

We crossed this allele out through three consecutive generations and observed twelve adult females caged with males. Studs were followed for the appearance of injuries at their external genitals. Heterozygous HoxD females bred successfully, without any indications of atypical female courtship (0 out of 12). This was in marked contrast with the observation of 12 out of 18 HoxD females carrying the intact Hoxd10 homeobox sequence and showing genital biting [1]. This difference was statistically significant (p = 0.001071) by the 2-sample test for equality of proportions with continuity correction Other abnormal phenotypic traits associated with the HoxD allele, like malocclusion and slow postnatal weight gain were also rescued [3]. These results provide strong genetic evidence of the direct role of the HOXD10 transcription factor in bringing about the courtship aberration observed in HoxD mice.

This atypical female courtship anomaly occurred in animals with a low abundance of Hoxd10 positive cells in adult forebrain, in both sides and at any observed rostra-caudal sections of the hippocampal formation, which display molecular and neuroanatomical characteristics reminiscent of a small subpopulation of GABAergic interneurons [1, 5], as characterized by the detection of both the Gad1 and Cck markers (Fig. 1d, e). Double labeling simultaneous FISH analyses with Hoxd10-dig and Gad1-fluo pair of probes indeed showed Hoxd10 positive cells localized selectively in the hippocampus, distributed in any of the layers of the Cornu Ammonis (CA) fields where it co-localized with Gad1 (Fig. 1f–h). Furthermore, by using Cck-flou and Hoxd10-dig probes simultaneously, we scored the Hoxd10 specific red signal in cells accumulating Cck transcripts (Fig. 1h). As all Cck positive non-principal cells seemed included in the Gad1 labeled pool, and since all Hoxd10 positive cells were part of the Cck positive non-principal pool, we concluded that ectopic Hoxd10 transcripts accumulated in a very sparse subpopulation of Cck positive GABAergic cells. Of note, Hoxd10 like other Hox genes is not expressed in any cells of a normal adult forebrain [6].

Discussion

The HoxD phenotype followed a gender-specific pattern of expressivity, limited to sexually receptive females, despite the fact that ectopic expression of Hoxd10 was similar in both sexes. The ectopic presence of this HOX product in CCK positive GABAergic neurons in adult hippocampus may thus interfere with the implementation of a particular genetic program in a sexually dimorphic manner, perhaps through the property of such proteins to exert a dominant negative effect in various contexts [7]. CCK signaling was previously associated with a sex-dependent control of behavior and its level seems to be modulated during the estrus cycle [8]. Also, the inactivation of the Cck2 receptor, which presumably mediates some effects of CCK neuropeptides in postsynaptic neurons, elicits behavioral alterations distinct in females as compared to males [9]. Altogether, this is consistent with a gender-specific role of CCK positive GABAergic cells in the modulation of behavior [10]. A persistent ectopic expression of HOXD10 in CCK positive hippocampal GABAergic cells may thus interfere with the function of these cells in controlling the dynamic physiological status of females during the estrous cycle [11].

Limitations

The Identification of GABAergic cells and the co-localization of ectopic Hoxd10 gene product accumulation was carried out relying on in situ hybridization detection of mRNA. This methodology provided a way to circumvent protein-based localization assays due to the absence of the required high-quality antibody. However, this approach does not allow for a rigorous evaluation of the HOXD10 protein distribution.