Literature DB >> 29579383

Engineered Charge Redistribution of Gp2 Proteins through Guided Diversity for Improved PET Imaging of Epidermal Growth Factor Receptor.

Brett A Case1, Max A Kruziki1, Sadie M Johnson1, Benjamin J Hackel1.   

Abstract

The Gp2 domain is a protein scaffold for synthetic ligand engineering. However, the native protein function results in a heterogeneous distribution of charge on the conserved surface, which may hinder further development and utility. We aim to modulate charge, without diminishing function, which is challenging in small proteins where each mutation is a significant fraction of protein structure. We constructed rationally guided combinatorial libraries with charge-neutralizing or charge-flipping mutations and sorted them, via yeast display and flow cytometry, for stability and target binding. Deep sequencing of functional variants revealed effective mutations both in clone-dependent contexts and broadly across binders to epidermal growth factor receptor (EGFR), insulin receptor, and immunoglobulin G. Functional mutants averaged 4.3 charge neutralizing mutations per domain while maintaining net negative charge. We evolved an EGFR-targeted Gp2 mutant that reduced charge density by 33%, maintained net charge, and improved charge distribution homogeneity while elevating thermal stability ( Tm = 87 ± 1 °C), improving binding specificity, and maintaining affinity ( Kd = 8.8 ± 0.6 nM). This molecule was conjugated with 1,4,7-triazacyclononane,1-glutaric acid-4,7-acetic acid for 64Cu chelation and evaluated for physiological distribution in mice with xenografted A431 (EGFRhigh) and MDA-MB-435 (EGFRlow) tumors. Excised tissue gamma counting and positron emission tomography/computed tomography imaging revealed good EGFRhigh tumor signal (4.7 ± 0.5%ID/g) at 2 h post-injection and molecular specificity evidenced by low uptake in EGFRlow tumors (0.6 ± 0.1%ID/g, significantly lower than for non-charge-modified Gp2, p = 0.01). These results provide charge mutations for an improved Gp2 framework, validate an effective approach to charge engineering, and advance performance of physiological EGFR targeting for molecular imaging.

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Year:  2018        PMID: 29579383      PMCID: PMC6051758          DOI: 10.1021/acs.bioconjchem.8b00144

Source DB:  PubMed          Journal:  Bioconjug Chem        ISSN: 1043-1802            Impact factor:   4.774


  71 in total

1.  Consensus-based engineering of protein stability: from intrabodies to thermostable enzymes.

Authors:  Boris Steipe
Journal:  Methods Enzymol       Date:  2004       Impact factor: 1.600

Review 2.  Antibody pharmacokinetics and pharmacodynamics.

Authors:  Evelyn D Lobo; Ryan J Hansen; Joseph P Balthasar
Journal:  J Pharm Sci       Date:  2004-11       Impact factor: 3.534

3.  An enhanced approach for engineering thermally stable proteins using yeast display.

Authors:  Tej V Pavoor; Jean A Wheasler; Viraj Kamat; Eric V Shusta
Journal:  Protein Eng Des Sel       Date:  2012-07-05       Impact factor: 1.650

4.  Comprehensive analysis of surface charged residues involved in thermal stability in Alicyclobacillus acidocaldarius esterase 2.

Authors:  Margherita Pezzullo; Pompea Del Vecchio; Luigi Mandrich; Roberto Nucci; Mosè Rossi; Giuseppe Manco
Journal:  Protein Eng Des Sel       Date:  2012-10-03       Impact factor: 1.650

5.  Sensitive affimer and antibody based impedimetric label-free assays for C-reactive protein.

Authors:  Anthony Johnson; Qifeng Song; Paul Ko Ferrigno; Paulo R Bueno; Jason J Davis
Journal:  Anal Chem       Date:  2012-07-26       Impact factor: 6.986

6.  Incorporation of a triglutamyl spacer improves the biodistribution of synthetic affibody molecules radiofluorinated at the N-terminus via oxime formation with (18)F-4-fluorobenzaldehyde.

Authors:  Daniel Rosik; Alf Thibblin; Gunnar Antoni; Hadis Honarvar; Joanna Strand; Ram Kumar Selvaraju; Mohamed Altai; Anna Orlova; Amelie Eriksson Karlström; Vladimir Tolmachev
Journal:  Bioconjug Chem       Date:  2013-12-27       Impact factor: 4.774

7.  Highly avid magnetic bead capture: an efficient selection method for de novo protein engineering utilizing yeast surface display.

Authors:  Margaret Ackerman; David Levary; Gabriel Tobon; Benjamin Hackel; Kelly Davis Orcutt; K Dane Wittrup
Journal:  Biotechnol Prog       Date:  2009 May-Jun

8.  The prognostic values of EGFR expression and KRAS mutation in patients with synchronous or metachronous metastatic colorectal cancer.

Authors:  Ching-Wen Huang; Hsiang-Lin Tsai; Yi-Ting Chen; Chun-Ming Huang; Cheng-Jen Ma; Chien-Yu Lu; Chao-Hung Kuo; Deng-Chyang Wu; Chee-Yin Chai; Jaw-Yuan Wang
Journal:  BMC Cancer       Date:  2013-12-13       Impact factor: 4.430

9.  Analysis Tool Web Services from the EMBL-EBI.

Authors:  Hamish McWilliam; Weizhong Li; Mahmut Uludag; Silvano Squizzato; Young Mi Park; Nicola Buso; Andrew Peter Cowley; Rodrigo Lopez
Journal:  Nucleic Acids Res       Date:  2013-05-13       Impact factor: 16.971

10.  Strong Enrichment of Aromatic Residues in Binding Sites from a Charge-neutralized Hyperthermostable Sso7d Scaffold Library.

Authors:  Michael W Traxlmayr; Jonathan D Kiefer; Raja R Srinivas; Elisabeth Lobner; Alison W Tisdale; Naveen K Mehta; Nicole J Yang; Bruce Tidor; K Dane Wittrup
Journal:  J Biol Chem       Date:  2016-08-30       Impact factor: 5.486

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  3 in total

1.  Constrained Combinatorial Libraries of Gp2 Proteins Enhance Discovery of PD-L1 Binders.

Authors:  Max A Kruziki; Vidur Sarma; Benjamin J Hackel
Journal:  ACS Comb Sci       Date:  2018-06-05       Impact factor: 3.784

2.  High-throughput developability assays enable library-scale identification of producible protein scaffold variants.

Authors:  Alexander W Golinski; Katelynn M Mischler; Sidharth Laxminarayan; Nicole L Neurock; Matthew Fossing; Hannah Pichman; Stefano Martiniani; Benjamin J Hackel
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-08       Impact factor: 11.205

3.  Directed Evolution Using Stabilized Bacterial Peptide Display.

Authors:  Tejas Navaratna; Lydia Atangcho; Mukesh Mahajan; Vivekanandan Subramanian; Marshall Case; Andrew Min; Daniel Tresnak; Greg M Thurber
Journal:  J Am Chem Soc       Date:  2020-01-10       Impact factor: 15.419

  3 in total

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