| Literature DB >> 29568647 |
Abstract
We review key mathematical models of the South African human immunodeficiency virus (HIV) epidemic from the early 1990s onwards. In our descriptions, we sometimes differentiate between the concepts of a model world and its mathematical or computational implementation. The model world is the conceptual realm in which we explicitly declare the rules - usually some simplification of 'real world' processes as we understand them. Computing details of informative scenarios in these model worlds is a task requiring specialist knowledge, but all other aspects of the modelling process, from describing the model world to identifying the scenarios and interpreting model outputs, should be understandable to anyone with an interest in the epidemic.Entities:
Year: 2018 PMID: 29568647 PMCID: PMC5843995 DOI: 10.4102/sajhivmed.v19i1.756
Source DB: PubMed Journal: South Afr J HIV Med ISSN: 1608-9693 Impact factor: 2.744
Examples of models of the South African HIV epidemic.
| Model | Model world | Scenarios | Implementation | |||
|---|---|---|---|---|---|---|
| Population | Transmission | Mortality | Interventions | |||
| Padayachee and Schall 1990 | Black people aged 15 to 49 | HIV incidence and prevalence estimated from blood transfusion, antenatal and clinic infection numbers. | Not applicable | None | Used data sources to estimate number of black people aged 15 to 49 with HIV from 1989 to 1991 | Three simple models using straightforward calculations |
| Doyle 1990 | Population divided by sex, 5-year age intervals and four HIV risk groups. | Mainly a function of risk group and the proportion of infected people, but ‘some allowance’ for ‘sexual activity according to age and sex’. | Age-related non-HIV mortality. Additional risk of mortality for people with HIV | None | Many. Doyle used it to estimate South African population, while Lee et al. used it to estimate infections in Soweto. The initial HIV-positive population is ‘imported’ into the model. | Macro |
| Padayachee 1992 | Individuals have age and sex. | Each person, adjusted for age and sex, has a probable number of sexual partners with whom they have sex a probable number times, each of whom has HIV with a specified probability. | Mortality not explicitly discussed, but number of AIDS cases calculated based on infection period | None | From 1985 a prespecified number of immigrants with HIV ‘seed’ the model. Number of HIV and AIDS cases estimated until 2000 | Micro |
| ASSA (various) | Population divided by sex, province, 5-year age intervals and four HIV risk groups. Infants enter the population annually. People with HIV at various clinical stages of progression. | Function of risk group, proportion of infected people, age and sex. Mother-to-child transmission also modelled. | Age and sex-related non-HIV mortality. Additional risk of mortality for people with HIV | From ASSA2002, antiretrovirals, mother-to-child transmission prevention, condoms, etc. | Calibrated to available data sources up to the year of the model suffix, and then projected forward. | Macro (originally as spreadsheets, then as C++ code) |
| Granich deterministic 2009 | People of no sex or specific age, except that they are 15 to 49 years. People with HIV are assigned to a WHO stage. | Homogenous: no risk groups, single incidence rate for the whole population. | Single mortality rate for people without HIV. Additional risk of mortality for people with HIV | Scaled-up universal test-and-treat versus treating at CD4 count of 350 versus no treatment | Calibrated to South African adult HIV epidemic. | Macro (the authors also did a stochastic model) |
| Hontelez 2015 | In the most complex model of their nine models, people are differentiated by age and sex. | Heterogeneous sexual behaviour. People are part of sexual networks and people at different stages of HIV infection have different degrees of infectiousness. | Age and sex-related non-HIV mortality. Additional risk of mortality for people with HIV | Similar to Granich et al. | Calibrated to South African adult HIV epidemic. | Micro |
| THEMBISA 2014–2016 | Population divided by sex, province, 5-year age intervals and HIV risk groups. Infants enter the population annually. People with HIV at various CD4 count based stages of progression. | Function of risk group, proportion of infected people, age and sex. Mother-to-child transmission also modelled. | Age and sex-related non-HIV mortality. Additional risk of mortality for people with HIV | Antiretrovirals, PMTCT Option B+, condoms, etc. | Calibrated similarly to ASSA but also includes additional data on marriages and partnerships. | Macro |