Literature DB >> 29561255

Arthrobacter ruber sp. nov., isolated from glacier ice.

Qing Liu1, Yu-Hua Xin2, Xiu-Ling Chen2, Hong-Can Liu2, Yu-Guang Zhou2, Wen-Xin Chen1.   

Abstract

A Gram-stain-positive strain designated MDB1-42T was isolated from ice collected from Midui glacier in Tibet, PR China. Strain MDB1-42T was catalase-positive, oxidase-negative and grew optimally at 25-28 °C and pH 7.0. Phylogenetic analysis based on 16S rRNA gene sequences revealed that MDB1-42T represented a member of the genus Arthrobacter. The highest level of 16S rRNA gene sequence similarity (99.86 %) was found with Arthrobacter agilis NBRC 15319T. Multilocus sequence analysis revealed low similarity of 91.93 % between MDB1-42T and Arthrobacter agilis NBRC 15319T. Average nucleotide identity and digital DNA-DNA hybridization values between MDB1-42T and the most closely related strain, Arthrobacter agilis DSM 20550T, were 81.36 and 24.5 %, respectively. The genomic DNA G+C content was 69.0 mol%. The major cellular fatty acids of MDB1-42T were anteiso-C15 : 0 and anteiso-C17:0. The polar lipids were phosphatidylglycerol, diphosphatidylglycerol, phosphatidylinositol, one unidentified glycolipid and one unidentified lipid. The predominant menaquinone was MK-9(H2). On the basis of results obtained using a polyphasic approach, a novel species Arthrobacter ruber sp. nov. is proposed, with MDB1-42T (=CGMCC 1.9772T=NBRC 113088T) as the type strain.

Entities:  

Keywords:  ANI; Arthrobacter; MLSA; digital DNA-DNA hybridization; glacier

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Year:  2018        PMID: 29561255     DOI: 10.1099/ijsem.0.002719

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  3 in total

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Journal:  J Microbiol       Date:  2019-05-11       Impact factor: 3.422

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Authors:  Yu-Chen Sun; Pengbo Sun; Jing Xue; Yunpeng Du; Hui Yan; Li-Wei Wang; Xin-Xin Yi; Jian-Guang Sun; Xiuhai Zhang; Jun-Lian Gao
Journal:  Antonie Van Leeuwenhoek       Date:  2022-01-28       Impact factor: 2.271

3.  Complete genome sequence of Arthrobacter sp. PAMC25564 and its comparative genome analysis for elucidating the role of CAZymes in cold adaptation.

Authors:  So-Ra Han; Byeollee Kim; Jong Hwa Jang; Hyun Park; Tae-Jin Oh
Journal:  BMC Genomics       Date:  2021-06-02       Impact factor: 3.969

  3 in total

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