Literature DB >> 29561145

Spectroscopy in Complex Environments from QM-MM Simulations.

Uriel N Morzan1, Diego J Alonso de Armiño1, Nicolás O Foglia1, Francisco Ramírez1, Mariano C González Lebrero1, Damián A Scherlis1, Darío A Estrin1.   

Abstract

The applications of multiscale quantum-classical (QM-MM) approaches have shown an extraordinary expansion and diversification in the last couple of decades. A great proportion of these efforts have been devoted to interpreting and reproducing spectroscopic experiments in a variety of complex environments such as solutions, interfaces, and biological systems. Today, QM-MM-based computational spectroscopy methods constitute accomplished tools with refined predictive power. The present review summarizes the advances that have been made in QM-MM approaches to UV-visible, Raman, IR, NMR, electron paramagnetic resonance, and Mössbauer spectroscopies, providing in every case an introductory discussion of the corresponding methodological background. A representative number of applications are presented to illustrate the historical evolution and the state of the art of this field, highlighting the advantages and limitations of the available methodologies. Finally, we present our view of the perspectives and open challenges in the field.

Year:  2018        PMID: 29561145     DOI: 10.1021/acs.chemrev.8b00026

Source DB:  PubMed          Journal:  Chem Rev        ISSN: 0009-2665            Impact factor:   60.622


  16 in total

Review 1.  From quantum to subcellular scales: multi-scale simulation approaches and the SIRAH force field.

Authors:  Matías R Machado; Ari Zeida; Leonardo Darré; Sergio Pantano
Journal:  Interface Focus       Date:  2019-04-19       Impact factor: 3.906

2.  A Many-Body, Fully Polarizable Approach to QM/MM Simulations.

Authors:  Eleftherios Lambros; Filippo Lipparini; Gerardo Andrés Cisneros; Francesco Paesani
Journal:  J Chem Theory Comput       Date:  2020-11-19       Impact factor: 6.006

3.  Evaluation of molecular photophysical and photochemical properties using linear response time-dependent density functional theory with classical embedding: Successes and challenges.

Authors:  WanZhen Liang; Zheng Pei; Yuezhi Mao; Yihan Shao
Journal:  J Chem Phys       Date:  2022-06-07       Impact factor: 4.304

4.  Harmonic Infrared and Raman Spectra in Molecular Environments Using the Polarizable Embedding Model.

Authors:  Karen Oda Hjorth Minde Dundas; Maarten T P Beerepoot; Magnus Ringholm; Simen Reine; Radovan Bast; Nanna Holmgaard List; Jacob Kongsted; Kenneth Ruud; Jógvan Magnus Haugaard Olsen
Journal:  J Chem Theory Comput       Date:  2021-05-19       Impact factor: 6.006

5.  The Impact of Electron Correlation on Describing QM/MM Interactions in the Attendant Molecular Dynamics Simulations of CO in Myoglobin.

Authors:  Xianwei Wang; Chenhui Lu; Maoyou Yang
Journal:  Sci Rep       Date:  2020-05-22       Impact factor: 4.379

6.  Interfacing CRYSTAL/AMBER to Optimize QM/MM Lennard⁻Jones Parameters for Water and to Study Solvation of TiO₂ Nanoparticles.

Authors:  Asmus Ougaard Dohn; Daniele Selli; Gianluca Fazio; Lorenzo Ferraro; Jens Jørgen Mortensen; Bartolomeo Civalleri; Cristiana Di Valentin
Journal:  Molecules       Date:  2018-11-13       Impact factor: 4.411

7.  Iron's Wake: The Performance of Quantum Mechanical-Derived Versus General-Purpose Force Fields Tested on a Luminescent Iron Complex.

Authors:  Valentin Diez-Cabanes; Giacomo Prampolini; Antonio Francés-Monerris; Antonio Monari; Mariachiara Pastore
Journal:  Molecules       Date:  2020-07-06       Impact factor: 4.411

Review 8.  Biomolecular interactions of ultrasmall metallic nanoparticles and nanoclusters.

Authors:  Alioscka A Sousa; Peter Schuck; Sergio A Hassan
Journal:  Nanoscale Adv       Date:  2021-04-28

Review 9.  A Review on Applications of Computational Methods in Drug Screening and Design.

Authors:  Xiaoqian Lin; Xiu Li; Xubo Lin
Journal:  Molecules       Date:  2020-03-18       Impact factor: 4.411

10.  MiMiC: Multiscale Modeling in Computational Chemistry.

Authors:  Viacheslav Bolnykh; Jógvan Magnus Haugaard Olsen; Simone Meloni; Martin P Bircher; Emiliano Ippoliti; Paolo Carloni; Ursula Rothlisberger
Journal:  Front Mol Biosci       Date:  2020-03-20
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