Literature DB >> 29560542

Proposing New RadLex Terms by Analyzing Free-Text Mammography Reports.

Hakan Bulu1, Dorothy A Sippo2, Janie M Lee3, Elizabeth S Burnside4, Daniel L Rubin1.   

Abstract

After years of development, the RadLex terminology contains a large set of controlled terms for the radiology domain, but gaps still exist. We developed a data-driven approach to discover new terms for RadLex by mining a large corpus of radiology reports using natural language processing (NLP) methods. Our system, developed for mammography, discovers new candidate terms by analyzing noun phrases in free-text reports to extend the mammography part of RadLex. Our NLP system extracts noun phrases from free-text mammography reports and classifies these noun phrases as "Has Candidate RadLex Term" or "Does Not Have Candidate RadLex Term." We tested the performance of our algorithm using 100 free-text mammography reports. An expert radiologist determined the true positive and true negative RadLex candidate terms. We calculated precision/positive predictive value and recall/sensitivity metrics to judge the system's performance. Finally, to identify new candidate terms for enhancing RadLex, we applied our NLP method to 270,540 free-text mammography reports obtained from three academic institutions. Our method demonstrated precision/positive predictive value of 0.77 (159/206 terms) and a recall/sensitivity of 0.94 (159/170 terms). The overall accuracy of the system is 0.80 (235/293 terms). When we ran our system on the set of 270,540 reports, it found 31,800 unique noun phrases that are potential candidates for RadLex. Our data-driven approach to mining radiology reports can identify new candidate terms for expanding the breast imaging lexicon portion of RadLex and may be a useful approach for discovering new candidate terms from other radiology domains.

Entities:  

Keywords:  Breast imaging; Informatics; Mammography; Natural language processing; Ontology; RadLex

Mesh:

Year:  2018        PMID: 29560542      PMCID: PMC6148814          DOI: 10.1007/s10278-018-0064-0

Source DB:  PubMed          Journal:  J Digit Imaging        ISSN: 0897-1889            Impact factor:   4.056


  6 in total

1.  Analysis of RadLex coverage and term co-occurrence in radiology reporting templates.

Authors:  Yi Hong; Jin Zhang; Marta E Heilbrun; Charles E Kahn
Journal:  J Digit Imaging       Date:  2012-02       Impact factor: 4.056

2.  Automatic extraction of concepts to extend RadLex.

Authors:  Rebecca Hazen; Alex P Van Esbroeck; Pat Mongkolwat; David S Channin
Journal:  J Digit Imaging       Date:  2011-02       Impact factor: 4.056

3.  Indexing thoracic CT reports using a preliminary version of a standardized radiological lexicon (RadLex).

Authors:  Dirk Marwede; Thomas Schulz; Thomas Kahn
Journal:  J Digit Imaging       Date:  2007-07-28       Impact factor: 4.056

4.  Evaluating the completeness of RadLex in the chest radiography domain.

Authors:  Ryan W Woods; John Eng
Journal:  Acad Radiol       Date:  2013-11       Impact factor: 3.173

5.  Assessing the performance of LOINC® and RadLex for coverage of CT scans across three sites in a health information exchange.

Authors:  Anton Oscar Beitia; Gilad Kuperman; Bradley N Delman; Jason S Shapiro
Journal:  AMIA Annu Symp Proc       Date:  2013-11-16

6.  The ACR BI-RADS experience: learning from history.

Authors:  Elizabeth S Burnside; Edward A Sickles; Lawrence W Bassett; Daniel L Rubin; Carol H Lee; Debra M Ikeda; Ellen B Mendelson; Pamela A Wilcox; Priscilla F Butler; Carl J D'Orsi
Journal:  J Am Coll Radiol       Date:  2009-12       Impact factor: 5.532

  6 in total
  3 in total

1.  Ontology-Based Radiology Teaching File Summarization, Coverage, and Integration.

Authors:  Priya Deshpande; Alexander Rasin; Jun Son; Sungmin Kim; Eli Brown; Jacob Furst; Daniela S Raicu; Steven M Montner; Samuel G Armato
Journal:  J Digit Imaging       Date:  2020-06       Impact factor: 4.056

2.  A decision support system for mammography reports interpretation.

Authors:  Marzieh Esmaeili; Seyed Mohammad Ayyoubzadeh; Nasrin Ahmadinejad; Marjan Ghazisaeedi; Azin Nahvijou; Keivan Maghooli
Journal:  Health Inf Sci Syst       Date:  2020-04-01

3.  A systematic review of natural language processing applied to radiology reports.

Authors:  Arlene Casey; Emma Davidson; Michael Poon; Hang Dong; Daniel Duma; Andreas Grivas; Claire Grover; Víctor Suárez-Paniagua; Richard Tobin; William Whiteley; Honghan Wu; Beatrice Alex
Journal:  BMC Med Inform Decis Mak       Date:  2021-06-03       Impact factor: 2.796

  3 in total

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