Literature DB >> 29558678

The use of single-cell RNA-Seq to understand virus-host interactions.

Sara Cristinelli1, Angela Ciuffi2.   

Abstract

Single-cell analyses allow uncovering cellular heterogeneity, not only per se, but also in response to viral infection. Similarly, single cell transcriptome analyses (scRNA-Seq) can highlight specific signatures, identifying cell subsets with particular phenotypes, which are relevant in the understanding of virus-host interactions.
Copyright © 2018 The Authors. Published by Elsevier B.V. All rights reserved.

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Year:  2018        PMID： 29558678     DOI： 10.1016/j.coviro.2018.03.001

Source DB:  PubMed          Journal:  Curr Opin Virol        ISSN： 1879-6257            Impact factor:   7.090


  21 in total

Review 1.  Beyond bulk: a review of single cell transcriptomics methodologies and applications.

Authors:  Ashwinikumar Kulkarni; Ashley G Anderson; Devin P Merullo; Genevieve Konopka
Journal:  Curr Opin Biotechnol       Date:  2019-04-10       Impact factor: 9.740

2.  Comprehensive Dual- and Triple-Feature Intersectional Single-Vector Delivery of Diverse Functional Payloads to Cells of Behaving Mammals.

Authors:  Lief E Fenno; Charu Ramakrishnan; Yoon Seok Kim; Kathryn E Evans; Maisie Lo; Sam Vesuna; Masatoshi Inoue; Kathy Y M Cheung; Elle Yuen; Nandini Pichamoorthy; Alice S O Hong; Karl Deisseroth
Journal:  Neuron       Date:  2020-06-22       Impact factor: 17.173

3.  RainDrop: Rapid activation matrix computation for droplet-based single-cell RNA-seq reads.

Authors:  Stefan Niebler; André Müller; Thomas Hankeln; Bertil Schmidt
Journal:  BMC Bioinformatics       Date:  2020-07-01       Impact factor: 3.169

Review 4.  Long Non-coding RNAs Involved in Pathogenic Infection.

Authors:  Shintaro Shirahama; Atsuko Miki; Toshikatsu Kaburaki; Nobuyoshi Akimitsu
Journal:  Front Genet       Date:  2020-05-26       Impact factor: 4.599

5.  SARS-CoV2 drives JAK1/2-dependent local and systemic complement hyper-activation.

Authors:  Bingyu Yan; Tilo Freiwald; Daniel Chauss; Luopin Wang; Erin West; Jack Bibby; Matthew Olson; Shahram Kordasti; Didier Portilla; Arian Laurence; Michail S Lionakis; Claudia Kemper; Behdad Afzali; Majid Kazemian
Journal:  Res Sq       Date:  2020-06-09

6.  Sixth European Seminar in Virology on Virus⁻Host Interaction at Single Cell and Organism Level.

Authors:  Elisa Saccon; Adriana Vitiello; Marta Trevisan; Cristiano Salata; Giorgio Palù
Journal:  Viruses       Date:  2018-07-28       Impact factor: 5.048

7.  Dissection of Influenza Infection In Vivo by Single-Cell RNA Sequencing.

Authors:  Yael Steuerman; Merav Cohen; Naama Peshes-Yaloz; Liran Valadarsky; Ofir Cohn; Eyal David; Amit Frishberg; Lior Mayo; Eran Bacharach; Ido Amit; Irit Gat-Viks
Journal:  Cell Syst       Date:  2018-06-06       Impact factor: 10.304

Review 8.  Microfluidics in Single-Cell Virology: Technologies and Applications.

Authors:  Wu Liu; Hongzhang He; Si-Yang Zheng
Journal:  Trends Biotechnol       Date:  2020-05-16       Impact factor: 19.536

Review 9.  The Role of Single-Cell Technology in the Study and Control of Infectious Diseases.

Authors:  Weikang Nicholas Lin; Matthew Zirui Tay; Ri Lu; Yi Liu; Chia-Hung Chen; Lih Feng Cheow
Journal:  Cells       Date:  2020-06-10       Impact factor: 6.600

Review 10.  Single-Cell Analysis of Foot-and-Mouth Disease Virus.

Authors:  Hailong Wang; Xiu Xin; Congyi Zheng; Chao Shen
Journal:  Front Microbiol       Date:  2020-03-05       Impact factor: 5.640
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