Literature DB >> 29558116

Structural Polymorphism in a Self-Assembled Tri-Aromatic Peptide System.

Noam Brown1,2, Jiangtao Lei3, Chendi Zhan3, Linda J W Shimon4, Lihi Adler-Abramovich5, Guanghong Wei3, Ehud Gazit1.   

Abstract

Self-assembly is a process of key importance in natural systems and in nanotechnology. Peptides are attractive building blocks due to their relative facile synthesis, biocompatibility, and other unique properties. Diphenylalanine (FF) and its derivatives are known to form nanostructures of various architectures and interesting and varied characteristics. The larger triphenylalanine peptide (FFF) was found to self-assemble as efficiently as FF, forming related but distinct architectures of plate-like and spherical nanostructures. Here, to understand the effect of triaromatic systems on the self-assembly process, we examined carboxybenzyl-protected diphenylalanine (z-FF) as a minimal model for such an arrangement. We explored different self-assembly conditions by changing solvent compositions and peptide concentrations, generating a phase diagram for the assemblies. We discovered that z-FF can form a variety of structures, including nanowires, fibers, nanospheres, and nanotoroids, the latter were previously observed only in considerably larger or co-assembly systems. Secondary structure analysis revealed that all assemblies possessed a β-sheet conformation. Additionally, in solvent combinations with high water ratios, z-FF formed rigid and self-healing hydrogels. X-ray crystallography revealed a "wishbone" structure, in which z-FF dimers are linked by hydrogen bonds mediated by methanol molecules, with a 2-fold screw symmetry along the c-axis. All-atom molecular dynamics (MD) simulations revealed conformations similar to the crystal structure. Coarse-grained MD simulated the assembly of the peptide into either fibers or spheres in different solvent systems, consistent with the experimental results. This work thus expands the building block library for the fabrication of nanostructures by peptide self-assembly.

Entities:  

Keywords:  diphenylalanine; peptide nanotubes; self-assembly; self-assembly mechanism; structural polymorphism; toroids

Mesh:

Substances:

Year:  2018        PMID: 29558116      PMCID: PMC6333291          DOI: 10.1021/acsnano.7b07723

Source DB:  PubMed          Journal:  ACS Nano        ISSN: 1936-0851            Impact factor:   15.881


  61 in total

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Journal:  Small       Date:  2015-04-30       Impact factor: 13.281

4.  Self-assembly of phenylalanine-based molecules.

Authors:  Helen W German; Sahin Uyaver; Ulrich H E Hansmann
Journal:  J Phys Chem A       Date:  2014-11-06       Impact factor: 2.781

5.  The structure of nanotubes formed by diphenylalanine, the core recognition motif of Alzheimer's beta-amyloid polypeptide.

Authors:  Carl Henrik Görbitz
Journal:  Chem Commun (Camb)       Date:  2006-04-13       Impact factor: 6.222

6.  Effects of water molecules on photoluminescence from hierarchical peptide nanotubes and water probing capability.

Authors:  Minjie Wang; Shijie Xiong; Xinglong Wu; Paul K Chu
Journal:  Small       Date:  2011-10-04       Impact factor: 13.281

Review 7.  The conformational analysis of peptides using Fourier transform IR spectroscopy.

Authors:  P I Haris; D Chapman
Journal:  Biopolymers       Date:  1995       Impact factor: 2.505

8.  Aβ(16-22) peptides can assemble into ordered β-barrels and bilayer β-sheets, while substitution of phenylalanine 19 by tryptophan increases the population of disordered aggregates.

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Journal:  J Phys Chem B       Date:  2013-08-26       Impact factor: 2.991

9.  Self-assembly of phenylalanine oligopeptides: insights from experiments and simulations.

Authors:  Phanourios Tamamis; Lihi Adler-Abramovich; Meital Reches; Karen Marshall; Pawel Sikorski; Louise Serpell; Ehud Gazit; Georgios Archontis
Journal:  Biophys J       Date:  2009-06-17       Impact factor: 4.033

Review 10.  Design of nanostructures based on aromatic peptide amphiphiles.

Authors:  Scott Fleming; Rein V Ulijn
Journal:  Chem Soc Rev       Date:  2014-09-08       Impact factor: 54.564

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  10 in total

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Review 2.  Ultrashort Peptide Self-Assembly: Front-Runners to Transport Drug and Gene Cargos.

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4.  Sequence-Dependent Nanofiber Structures of Phenylalanine and Isoleucine Tripeptides.

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Journal:  Int J Mol Sci       Date:  2020-11-10       Impact factor: 5.923

5.  Nanoscale Assembly of Functional Peptides with Divergent Programming Elements.

Authors:  Ana M Garcia; Michele Melchionna; Ottavia Bellotto; Slavko Kralj; Sabrina Semeraro; Evelina Parisi; Daniel Iglesias; Paola D'Andrea; Rita De Zorzi; Attilio V Vargiu; Silvia Marchesan
Journal:  ACS Nano       Date:  2021-02-12       Impact factor: 15.881

Review 6.  Revisiting the Self-Assembly of Highly Aromatic Phenylalanine Homopeptides.

Authors:  Enric Mayans; Carlos Alemán
Journal:  Molecules       Date:  2020-12-20       Impact factor: 4.411

Review 7.  Peptide-Based Hydrogels: New Materials for Biosensing and Biomedical Applications.

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Journal:  Materials (Basel)       Date:  2022-08-25       Impact factor: 3.748

Review 8.  Short Peptide-Based Smart Thixotropic Hydrogels.

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Journal:  Gels       Date:  2022-09-07

9.  Bifunctional supramolecular nanofiber inhibits atherosclerosis by enhancing plaque stability and anti-inflammation in apoE-/- mice.

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Journal:  Theranostics       Date:  2020-08-13       Impact factor: 11.556

10.  A Rapid Self-Assembly Peptide Hydrogel for Recruitment and Activation of Immune Cells.

Authors:  Ruyue Luo; Yuan Wan; Xinyi Luo; Guicen Liu; Zhaoxu Li; Jialei Chen; Di Su; Na Lu; Zhongli Luo
Journal:  Molecules       Date:  2022-01-10       Impact factor: 4.411

  10 in total

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