Literature DB >> 29556051

Evidence for a vibrational phase-dependent isotope effect on the photochemistry of vision.

C Schnedermann1,2, X Yang3, M Liebel1,4, K M Spillane1,5,6, J Lugtenburg7, I Fernández7,8, A Valentini9,10, I Schapiro11, M Olivucci12,13,14, P Kukura15, R A Mathies16.   

Abstract

Vibronic coupling is key to efficient energy flow in molecular systems and a critical component of most mechanisms invoking quantum effects in biological processes. Despite increasing evidence for coherent coupling of electronic states being mediated by vibrational motion, it is not clear how and to what degree properties associated with vibrational coherence such as phase and coupling of atomic motion can impact the efficiency of light-induced processes under natural, incoherent illumination. Here, we show that deuteration of the H11-C11=C12-H12 double-bond of the 11-cis retinal chromophore in the visual pigment rhodopsin significantly and unexpectedly alters the photoisomerization yield while inducing smaller changes in the ultrafast isomerization dynamics assignable to known isotope effects. Combination of these results with non-adiabatic molecular dynamics simulations reveals a vibrational phase-dependent isotope effect that we suggest is an intrinsic attribute of vibronically coherent photochemical processes.

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Year:  2018        PMID: 29556051     DOI: 10.1038/s41557-018-0014-y

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  16 in total

1.  Relationship between Excited State Lifetime and Isomerization Quantum Yield in Animal Rhodopsins: Beyond the One-Dimensional Landau-Zener Model.

Authors:  Mohsen M T El-Tahawy; Artur Nenov; Oliver Weingart; Massimo Olivucci; Marco Garavelli
Journal:  J Phys Chem Lett       Date:  2018-06-06       Impact factor: 6.475

Review 2.  Quantum Mechanical and Molecular Mechanics Modeling of Membrane-Embedded Rhodopsins.

Authors:  Mikhail N Ryazantsev; Dmitrii M Nikolaev; Andrey V Struts; Michael F Brown
Journal:  J Membr Biol       Date:  2019-09-30       Impact factor: 1.843

3.  Synthesis of 9-CD3-9-cis-Retinal Cofactor of Isorhodopsin.

Authors:  Mozhgan Navidi; Shreya Yadav; Andrey V Struts; Michael F Brown; Nasri Nesnas
Journal:  Tetrahedron Lett       Date:  2018-11-10       Impact factor: 2.415

4.  Assessment of MC-PDFT Excitation Energies for a Set of QM/MM Models of Rhodopsins.

Authors:  María Del Carmen Marín; Luca De Vico; Sijia S Dong; Laura Gagliardi; Donald G Truhlar; Massimo Olivucci
Journal:  J Chem Theory Comput       Date:  2019-02-20       Impact factor: 6.006

5.  a-ARM: Automatic Rhodopsin Modeling with Chromophore Cavity Generation, Ionization State Selection, and External Counterion Placement.

Authors:  Laura Pedraza-González; Luca De Vico; Marı A Del Carmen Marı N; Francesca Fanelli; Massimo Olivucci
Journal:  J Chem Theory Comput       Date:  2019-04-12       Impact factor: 6.006

Review 6.  Rhodopsins: An Excitingly Versatile Protein Species for Research, Development and Creative Engineering.

Authors:  Willem J de Grip; Srividya Ganapathy
Journal:  Front Chem       Date:  2022-06-22       Impact factor: 5.545

7.  Visual cycle proteins: Structure, function, and roles in human retinal disease.

Authors:  Andrew Tsin; Brandi Betts-Obregon; Jeffery Grigsby
Journal:  J Biol Chem       Date:  2018-07-12       Impact factor: 5.157

Review 8.  Frontiers in Multiscale Modeling of Photoreceptor Proteins.

Authors:  Maria-Andrea Mroginski; Suliman Adam; Gil S Amoyal; Avishai Barnoy; Ana-Nicoleta Bondar; Veniamin A Borin; Jonathan R Church; Tatiana Domratcheva; Bernd Ensing; Francesca Fanelli; Nicolas Ferré; Ofer Filiba; Laura Pedraza-González; Ronald González; Cristina E González-Espinoza; Rajiv K Kar; Lukas Kemmler; Seung Soo Kim; Jacob Kongsted; Anna I Krylov; Yigal Lahav; Michalis Lazaratos; Qays NasserEddin; Isabelle Navizet; Alexander Nemukhin; Massimo Olivucci; Jógvan Magnus Haugaard Olsen; Alberto Pérez de Alba Ortíz; Elisa Pieri; Aditya G Rao; Young Min Rhee; Niccolò Ricardi; Saumik Sen; Ilia A Solov'yov; Luca De Vico; Tomasz A Wesolowski; Christian Wiebeler; Xuchun Yang; Igor Schapiro
Journal:  Photochem Photobiol       Date:  2021-02-13       Impact factor: 3.521

9.  Coherent exciton-vibrational dynamics and energy transfer in conjugated organics.

Authors:  Tammie R Nelson; Dianelys Ondarse-Alvarez; Nicolas Oldani; Beatriz Rodriguez-Hernandez; Laura Alfonso-Hernandez; Johan F Galindo; Valeria D Kleiman; Sebastian Fernandez-Alberti; Adrian E Roitberg; Sergei Tretiak
Journal:  Nat Commun       Date:  2018-06-13       Impact factor: 14.919

10.  Combining Graphics Processing Units, Simplified Time-Dependent Density Functional Theory, and Finite-Difference Couplings to Accelerate Nonadiabatic Molecular Dynamics.

Authors:  Laurens D M Peters; Jörg Kussmann; Christian Ochsenfeld
Journal:  J Phys Chem Lett       Date:  2020-05-06       Impact factor: 6.475

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