Literature DB >> 29555028

Molecular genetics ‎characterization and homology modeling of the CHM gene mutation: A study on its association with choroideremia.

Saber Imani1, Iqra Ijaz2, Marzieh Dehghan Shasaltaneh3, Shangyi Fu4, Jingliang Cheng2, Junjiang Fu5.   

Abstract

Choroideremia (CHM) is a rare form of X-linked chorioretinal dystrophy that is caused by mutations in the CHM gene. Mutations in the Rab escort protein-1 (REP-1), an ubiquitously encoded protein of the CHM gene, lead to prenylation and vesicle trafficking deficiency in the protein, resulting in the progressive degeneration of choriocapillaris, retinal pigment epithelium (RPE), and photoreceptors. Despite previous studies concerning this disease, no effective diagnostic tests or established therapeutic interventions currently exist for CHM. In this paper, we reviewed ‎the pathogenic ‎effects of synonymous hotspot mutation in the CHM gene and the genotypic-phenotypic associations in families with CHM. In addition, we employed a combination of molecular dynamics simulations and principal component analysis to gain insight into the underlying molecular basis of these deleterious and disease-causing hotspot mutation ‎analogs. These computer predictions provide strong evidence that the C > T nonsynonymous hotspot mutations of CHM spectrum contribute to overall RPE retinopathy. These findings increase our understanding of the CHM ‎pathogenesis, which may potentially define a new approach in developing novel symbiotic strategies for genetic diagnosis and specific treatment of inherited retinal diseases.
Copyright © 2018 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  CHM gene; Choroideremia; Hotspot mutation; Molecular dynamics simulation; Rab escort protein-1

Mesh:

Substances:

Year:  2018        PMID: 29555028     DOI: 10.1016/j.mrrev.2018.02.001

Source DB:  PubMed          Journal:  Mutat Res Rev Mutat Res        ISSN: 1383-5742            Impact factor:   5.657


  13 in total

1.  Spectrum of Disease Severity and Phenotype in Choroideremia Carriers.

Authors:  Ruben Jauregui; Karen Sophia Park; Akemi J Tanaka; Ahra Cho; Maarjaliis Paavo; Jana Zernant; Jasmine H Francis; Rando Allikmets; Janet R Sparrow; Stephen H Tsang
Journal:  Am J Ophthalmol       Date:  2019-06-08       Impact factor: 5.258

2.  Novel compound heterozygous missense variants (c.G955A and c.A1822C) of CACNA2D4 likely causing autosomal recessive retinitis pigmentosa in a Chinese patient.

Authors:  Jingliang Cheng; Qi Zhou; Jiewen Fu; Chunli Wei; Lianmei Zhang; Md Shamsuddin Sultan Khan; Hongbin Lv; Songyot Anuchapreeda; Junjiang Fu
Journal:  3 Biotech       Date:  2021-04-10       Impact factor: 2.406

3.  Targeted Next-Generation Sequencing Identified Novel Compound Heterozygous Variants in the CDH23 Gene Causing Usher Syndrome Type ID in a Chinese Patient.

Authors:  Lianmei Zhang; Jingliang Cheng; Qi Zhou; Md Asaduzzaman Khan; Jiewen Fu; Chengxia Duan; Suan Sun; Hongbin Lv; Junjiang Fu
Journal:  Front Genet       Date:  2020-04-30       Impact factor: 4.599

4.  Whole exome sequencing of a family revealed a novel variant in the CHM gene, c.22delG p.(Glu8Serfs*4), which co-segregated with choroideremia.

Authors:  Handong Dan; Tuo Li; Xinlan Lei; Xin Huang; Yiqiao Xing; Yin Shen
Journal:  Biosci Rep       Date:  2020-05-29       Impact factor: 3.840

5.  A case of Usher syndrome type IIA caused by a rare USH2A homozygous frameshift variant with maternal uniparental disomy (UPD) in a Chinese family.

Authors:  Jiewen Fu; Shiyi Shen; Jingliang Cheng; Hongbin Lv; Junjiang Fu
Journal:  J Cell Mol Med       Date:  2020-05-25       Impact factor: 5.310

6.  Novel splicing variant c. 208+2T>C in BBS5 segregates with Bardet-Biedl syndrome in an Iranian family by targeted exome sequencing.

Authors:  Saber Imani; Jingliang Cheng; Jiewen Fu; Abdolkarim Mobasher-Jannat; Chunli Wei; Saman Mohazzab-Torabi; Khosrow Jadidi; Mohammad Hossein Khosravi; Marzieh Dehghan Shasaltaneh; Lisha Yang; Md Asaduzzaman Khan; Junjiang Fu
Journal:  Biosci Rep       Date:  2019-03-28       Impact factor: 3.840

7.  A novel homozygous variant of GPR98 causes usher syndrome type IIC in a consanguineous Chinese family by next generation sequencing.

Authors:  Chunli Wei; Lisha Yang; Jingliang Cheng; Saber Imani; Shangyi Fu; Hongbin Lv; Yumei Li; Rui Chen; Elaine Lai-Han Leung; Junjiang Fu
Journal:  BMC Med Genet       Date:  2018-06-11       Impact factor: 2.103

8.  In silico data analyses of the hotspot mutations of CHM gene in choroideremia disease.

Authors:  Saber Imani; Iqra Ijaz; Marzieh Dehghan Shasaltaneh; Shangyi Fu; Jingliang Cheng; Junjiang Fu
Journal:  Data Brief       Date:  2018-04-12

9.  A novel, homozygous nonsense variant of the CDHR1 gene in a Chinese family causes autosomal recessive retinal dystrophy by NGS-based genetic diagnosis.

Authors:  Jiewen Fu; Lu Ma; Jingliang Cheng; Lisha Yang; Chunli Wei; Shangyi Fu; Hongbin Lv; Rui Chen; Junjiang Fu
Journal:  J Cell Mol Med       Date:  2018-08-30       Impact factor: 5.310

10.  Identification of a novel germline BRCA2 variant in a Chinese breast cancer family.

Authors:  Jingliang Cheng; Jiangzhou Peng; Jiewen Fu; Md Asaduzzaman Khan; Pingping Tan; Chunli Wei; Xiyun Deng; Hanchun Chen; Junjiang Fu
Journal:  J Cell Mol Med       Date:  2019-11-28       Impact factor: 5.310

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