Literature DB >> 29554288

TI Workbench, an integrated software package for electrophysiology and imaging.

Takafumi Inoue1.   

Abstract

TI Workbench is a software package that serves as a control and analysis center for cellular imaging and electrophysiological experiments. It is unique among general-purpose software packages where it integrates the control of cellular imaging and electrophysiological devices, as well as sophisticated data analyses, which provides superior usability in imaging experiments combined with electrophysiology. During the development over the last 20 years, the range of supported image acquisition devices has expanded from cooled charge-coupled device (CCD) cameras to multi-photon microscope systems. In this review, I outline the concept of TI Workbench together with its unique functions and features derived from ideas emerging during daily experiments in my own lab and in those of my collaborators over the last 20 years. TI Workbench includes standard functions required for time-lapse multicolor fluorescence imaging and electrophysiological experiments, in addition to specialized functions such as random-scan or conventional raster-scan two-photon microscopy packages and fluorescence life time imaging (FLIM) utilities. Data analysis modules, e.g. digital data filters for temporal waveforms of time-lapse image data and electrophysiology and for 2-D image data, and fluorescence correlation spectroscopy (FCS) analysis functions, are well integrated with data acquisition functions. A notebook function holds formatted text, graphs, image and movie data altogether, which are linked to the actual data files. TI Workbench uses Igor Pro software as a back-end output for publishing. In addition, TI Workbench imports several different formats of image and electrophysiology data, serving as a general-purpose data analysis software package.

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Year:  2018        PMID: 29554288     DOI: 10.1093/jmicro/dfy015

Source DB:  PubMed          Journal:  Microscopy (Oxf)        ISSN: 2050-5698            Impact factor:   1.571


  12 in total

1.  Ventral hippocampal projections to the medial prefrontal cortex regulate social memory.

Authors:  Mary L Phillips; Holly Anne Robinson; Lucas Pozzo-Miller
Journal:  Elife       Date:  2019-05-21       Impact factor: 8.140

2.  Quantification of native mRNA dynamics in living neurons using fluorescence correlation spectroscopy and reduction-triggered fluorescent probes.

Authors:  Hirotaka Fujita; Ryota Oikawa; Mayu Hayakawa; Fumiaki Tomoike; Yasuaki Kimura; Hiroyuki Okuno; Yoshiki Hatashita; Carolina Fiallos Oliveros; Haruhiko Bito; Toshio Ohshima; Satoshi Tsuneda; Hiroshi Abe; Takafumi Inoue
Journal:  J Biol Chem       Date:  2020-04-27       Impact factor: 5.157

3.  Discharge and Role of GABA Pontomesencephalic Neurons in Cortical Activity and Sleep-Wake States Examined by Optogenetics and Juxtacellular Recordings in Mice.

Authors:  Youssouf Cissé; Masaru Ishibashi; Josefa Jost; Hanieh Toossi; Lynda Mainville; Antoine Adamantidis; Christopher S Leonard; Barbara E Jones
Journal:  J Neurosci       Date:  2020-06-23       Impact factor: 6.167

4.  Sonic hedgehog enhances calcium oscillations in hippocampal astrocytes.

Authors:  Chihiro Adachi; Naoto Kakinuma; Soo Hyun Jo; Takayuki Ishii; Yusuke Arai; Satoshi Arai; Tetsuya Kitaguchi; Sen Takeda; Takafumi Inoue
Journal:  J Biol Chem       Date:  2019-09-10       Impact factor: 5.157

5.  Traceable stimulus-dependent rapid molecular changes in dendritic spines in the brain.

Authors:  Kazuya Kuboyama; Takafumi Inoue; Yuki Hashimotodani; Takuya Itoh; Tohsuke Suzuki; Aya Tetsuzawa; Yosuke Ohtsuka; Ryo Kinoshita; Ren Takara; Tohru Miyazawa; Pooja Gusain; Masanobu Kano; Maki K Yamada
Journal:  Sci Rep       Date:  2020-09-17       Impact factor: 4.379

6.  Ca2+ efflux via plasma membrane Ca2+-ATPase mediates chemotaxis in ascidian sperm.

Authors:  Kaoru Yoshida; Kogiku Shiba; Ayako Sakamoto; Jumpei Ikenaga; Shigeru Matsunaga; Kazuo Inaba; Manabu Yoshida
Journal:  Sci Rep       Date:  2018-11-09       Impact factor: 4.379

7.  Estrogen and EGFR Pathways Regulate Notch Signaling in Opposing Directions for Multi-Ciliogenesis in the Fallopian Tube.

Authors:  Maobi Zhu; Tomohiko Iwano; Sen Takeda
Journal:  Cells       Date:  2019-08-19       Impact factor: 6.600

8.  Astrocytic endfeet re-cover blood vessels after removal by laser ablation.

Authors:  Hideaki Kubotera; Hiroko Ikeshima-Kataoka; Yoshiki Hatashita; Anna Letizia Allegra Mascaro; Francesco Saverio Pavone; Takafumi Inoue
Journal:  Sci Rep       Date:  2019-02-04       Impact factor: 4.379

9.  Differences in GluN2B-Containing NMDA Receptors Result in Distinct Long-Term Plasticity at Ipsilateral versus Contralateral Cortico-Striatal Synapses.

Authors:  Wei Li; Lucas Pozzo-Miller
Journal:  eNeuro       Date:  2019-11-27

10.  Fallopian Tube Basal Stem Cells Reproducing the Epithelial Sheets In Vitro-Stem Cell of Fallopian Epithelium.

Authors:  Maobi Zhu; Tomohiko Iwano; Sen Takeda
Journal:  Biomolecules       Date:  2020-09-03
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