Literature DB >> 29552886

Phoresis and Enhanced Diffusion Compete in Enzyme Chemotaxis.

Jaime Agudo-Canalejo1,2, Pierre Illien1,2,3, Ramin Golestanian1,4.   

Abstract

Chemotaxis of enzymes in response to gradients in the concentration of their substrate has been widely reported in recent experiments, but a basic understanding of the process is still lacking. Here, we develop a microscopic theory for chemotaxis that is valid for enzymes and other small molecules. Our theory includes both nonspecific interactions between enzyme and substrate as well as complex formation through specific binding between the enzyme and the substrate. We find that two distinct mechanisms contribute to enzyme chemotaxis: a diffusiophoretic mechanism due to the nonspecific interactions and a new type of mechanism due to binding-induced changes in the diffusion coefficient of the enzyme. The latter chemotactic mechanism points toward lower substrate concentration if the substrate enhances enzyme diffusion and toward higher substrate concentration if the substrate inhibits enzyme diffusion. For a typical enzyme, attractive phoresis and binding-induced enhanced diffusion will compete against each other. We find that phoresis dominates above a critical substrate concentration, whereas binding-induced enhanced diffusion dominates for low substrate concentration. Our results resolve an apparent contradiction regarding the direction of urease chemotaxis observed in experiments and, in general, clarify the relation between the enhanced diffusion and the chemotaxis of enzymes. Finally, we show that the competition between the two distinct chemotactic mechanisms may be used to engineer nanomachines that move toward or away from regions with a specific substrate concentration.

Keywords:  Chemotaxis; diffusion; enzymes; phoresis

Mesh:

Substances:

Year:  2018        PMID: 29552886     DOI: 10.1021/acs.nanolett.8b00717

Source DB:  PubMed          Journal:  Nano Lett        ISSN: 1530-6984            Impact factor:   11.189


  11 in total

Review 1.  Biodegradation and Prospect of Polysaccharide from Crustaceans.

Authors:  Shuting Qiu; Shipeng Zhou; Yue Tan; Jiayao Feng; Yan Bai; Jincan He; Hua Cao; Qishi Che; Jiao Guo; Zhengquan Su
Journal:  Mar Drugs       Date:  2022-05-02       Impact factor: 6.085

2.  Master curve of boosted diffusion for 10 catalytic enzymes.

Authors:  Ah-Young Jee; Tsvi Tlusty; Steve Granick
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-09       Impact factor: 11.205

3.  Nanoscale Catalyst Chemotaxis Can Drive the Assembly of Functional Pathways.

Authors:  Charles Kocher; Luca Agozzino; Ken Dill
Journal:  J Phys Chem B       Date:  2021-07-29       Impact factor: 3.466

4.  Molecular Diffusivity of Click Reaction Components: The Diffusion Enhancement Question.

Authors:  Nasrollah Rezaei-Ghaleh; Jaime Agudo-Canalejo; Christian Griesinger; Ramin Golestanian
Journal:  J Am Chem Soc       Date:  2022-01-14       Impact factor: 16.383

5.  Comment on "Relative Diffusivities of Bound and Unbound Protein Can Control Chemotactic Directionality".

Authors:  Jaime Agudo-Canalejo; Pierre Illien; Ramin Golestanian
Journal:  Langmuir       Date:  2022-02-17       Impact factor: 3.882

Review 6.  Perspective: a stirring role for metabolism in cells.

Authors:  José Losa; Simeon Leupold; Diego Alonso-Martinez; Petteri Vainikka; Sebastian Thallmair; Katarzyna M Tych; Siewert J Marrink; Matthias Heinemann
Journal:  Mol Syst Biol       Date:  2022-04       Impact factor: 11.429

7.  Chemotactic smoothing of collective migration.

Authors:  Tapomoy Bhattacharjee; Daniel B Amchin; Ricard Alert; Jenna Anne Ott; Sujit Sankar Datta
Journal:  Elife       Date:  2022-03-08       Impact factor: 8.140

8.  Catalytic enzymes are active matter.

Authors:  Ah-Young Jee; Yoon-Kyoung Cho; Steve Granick; Tsvi Tlusty
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-01       Impact factor: 11.205

9.  Non-equilibrium phase separation in mixtures of catalytically active particles: size dispersity and screening effects.

Authors:  Vincent Ouazan-Reboul; Jaime Agudo-Canalejo; Ramin Golestanian
Journal:  Eur Phys J E Soft Matter       Date:  2021-09-03       Impact factor: 1.890

10.  Sustained enzymatic activity and flow in crowded protein droplets.

Authors:  Andrea Testa; Mirco Dindo; Aleksander A Rebane; Babak Nasouri; Robert W Style; Ramin Golestanian; Eric R Dufresne; Paola Laurino
Journal:  Nat Commun       Date:  2021-11-01       Impact factor: 14.919

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