Literature DB >> 29551291

A Rare Lysozyme Crystal Form Solved Using Highly Redundant Multiple Electron Diffraction Datasets from Micron-Sized Crystals.

Hongyi Xu1, Hugo Lebrette2, Taimin Yang1, Vivek Srinivas2, Sven Hovmöller1, Martin Högbom3, Xiaodong Zou4.   

Abstract

Recent developments of novel electron diffraction techniques have shown to be powerful for determination of atomic resolution structures from micron- and nano-sized crystals, too small to be studied by single-crystal X-ray diffraction. In this work, the structure of a rare lysozyme polymorph is solved and refined using continuous rotation MicroED data and standard X-ray crystallographic software. Data collection was performed on a standard 200 kV transmission electron microscope (TEM) using a highly sensitive detector with a short readout time. The data collection is fast (∼3 min per crystal), allowing multiple datasets to be rapidly collected from a large number of crystals. We show that merging data from 33 crystals significantly improves not only the data completeness, overall I/σ and the data redundancy, but also the quality of the final atomic model. This is extremely useful for electron beam-sensitive crystals of low symmetry or with a preferred orientation on the TEM grid.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Keywords:  MicroED; continuous rotation electron diffraction; cryo-EM; electron crystallography; electron diffraction; lysozyme; macromolecular structure; protein crystallography; protein structure; transmission electron microscopy

Mesh:

Substances:

Year:  2018        PMID: 29551291     DOI: 10.1016/j.str.2018.02.015

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  17 in total

Review 1.  Electron Diffraction of 3D Molecular Crystals.

Authors:  Ambarneil Saha; Shervin S Nia; José A Rodríguez
Journal:  Chem Rev       Date:  2022-08-15       Impact factor: 72.087

2.  Experimental Phasing of MicroED Data Using Radiation Damage.

Authors:  Michael W Martynowycz; Johan Hattne; Tamir Gonen
Journal:  Structure       Date:  2020-02-04       Impact factor: 5.006

3.  Machining protein microcrystals for structure determination by electron diffraction.

Authors:  Helen M E Duyvesteyn; Abhay Kotecha; Helen M Ginn; Corey W Hecksel; Emma V Beale; Felix de Haas; Gwyndaf Evans; Peijun Zhang; Wah Chiu; David I Stuart
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-31       Impact factor: 12.779

4.  Nanoscale mosaicity revealed in peptide microcrystals by scanning electron nanodiffraction.

Authors:  Marcus Gallagher-Jones; Colin Ophus; Karen C Bustillo; David R Boyer; Ouliana Panova; Calina Glynn; Chih-Te Zee; Jim Ciston; Kevin Canton Mancia; Andrew M Minor; Jose A Rodriguez
Journal:  Commun Biol       Date:  2019-01-18

5.  High-throughput continuous rotation electron diffraction data acquisition via software automation.

Authors:  Magdalena Ola Cichocka; Jonas Ångström; Bin Wang; Xiaodong Zou; Stef Smeets
Journal:  J Appl Crystallogr       Date:  2018-11-22       Impact factor: 3.304

6.  Automated serial rotation electron diffraction combined with cluster analysis: an efficient multi-crystal workflow for structure determination.

Authors:  Bin Wang; Xiaodong Zou; Stef Smeets
Journal:  IUCrJ       Date:  2019-07-12       Impact factor: 4.769

Review 7.  3D Electron Diffraction: The Nanocrystallography Revolution.

Authors:  Mauro Gemmi; Enrico Mugnaioli; Tatiana E Gorelik; Ute Kolb; Lukas Palatinus; Philippe Boullay; Sven Hovmöller; Jan Pieter Abrahams
Journal:  ACS Cent Sci       Date:  2019-07-19       Impact factor: 14.553

8.  3D-structured supports create complete data sets for electron crystallography.

Authors:  Julian T C Wennmacher; Christian Zaubitzer; Teng Li; Yeon Kyoung Bahk; Jing Wang; Jeroen A van Bokhoven; Tim Gruene
Journal:  Nat Commun       Date:  2019-07-25       Impact factor: 14.919

9.  Visualizing drug binding interactions using microcrystal electron diffraction.

Authors:  Max T B Clabbers; S Zoë Fisher; Mathieu Coinçon; Xiaodong Zou; Hongyi Xu
Journal:  Commun Biol       Date:  2020-07-31

10.  Fragment-based determination of a proteinase K structure from MicroED data using ARCIMBOLDO_SHREDDER.

Authors:  Logan S Richards; Claudia Millán; Jennifer Miao; Michael W Martynowycz; Michael R Sawaya; Tamir Gonen; Rafael J Borges; Isabel Usón; Jose A Rodriguez
Journal:  Acta Crystallogr D Struct Biol       Date:  2020-07-27       Impact factor: 7.652

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